NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM117857 Query DataSets for GSM117857
Status Public on Sep 01, 2006
Title T_P_108_201
Sample type genomic
 
Source name Paraffin Tumor DNA from patient 108
Organism Homo sapiens
Characteristics Colorectal cancer
Low intensity replicate
Extracted molecule genomic DNA
Extraction protocol DNA isolation was performed by salting out precipitation.
Label Cy3/Cy5
Label protocol DNA was prepared according to the standard Illumina protocol from 4 x 250 ng of DNA
 
Description Genotype and allele specfic intensity of leukocyte DNA
Data processing GenCall 6.0.0.7
 
Submission date Jun 30, 2006
Last update date Aug 17, 2006
Contact name Jan Oosting
Phone +31 71 5266619
Organization name Leiden University Medical Center
Department Pathology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL3896
Series (1)
GSE5347 High Resolution Copy Number Analysis of Paraffin Embedded Archival Tissue Using SNP BeadArrays

Data table header descriptions
ID_REF
VALUE Gencall score, sample specific quality score for genotype
GENOTYPE Genotype A,B,H
GTS Gentrain score, experiment wide quality score for genotype
GREEN Green/Cy3 Intensity
RED Red/Cy5 Intensity

Data table
ID_REF VALUE GENOTYPE GTS GREEN RED
rs884080-116.3_B_R_62439 0.7269893 B 0.7736175 312 422
rs2017143-119.1_T_R_20 0.7349336 A 0.7820713 334 147
rs2840531-119.1_T_R_484358 0.7429432 B 0.8322048 293 551
rs2477703-119.1_B_F_484359 0.4822533 H 0.5131844 345 240
rs734999-119.1_B_F_484360 0.4917575 A 0.523353 533 144
rs2377041-116_B_R_484361 0.5916392 H 0.6627223 422 281
rs2606418-119.1_B_R_484363 0.829838 B 0.8830628 298 316
rs2027262-111_B_F_484364 0.8243063 A 0.8771762 523 143
rs2981881-116.3_T_F_484365 0.6760352 H 0.7194037 299 329
rs7534363-116.2_B_F_484367 0.3959793 A 0.601967 804 159
rs2065525-119.1_B_R_484368 0.4939125 H 0.5255914 465 249
rs2821039-119.1_T_R_484369 0.5073823 H 0.5399252 346 202
rs878063-119.1_T_R_484370 0.4673215 B 0.4973229 291 293
rs1870509-119.1_T_R_1039909 0.408544 H 0.4347475 286 171
rs2035453-94.3_T_R_1039639 0.3934268 H 0.4186607 494 260
rs557477-119.1_B_F_1040102 0.4770742 H 0.5076731 322 214
rs912991-119.1_T_F_1039773 0.6532485 B 0.6951661 311 303
rs1570964-119.1_B_F_1039413 0.4926264 H 0.5242264 309 157
rs729206-119.1_B_R_1039926 0.6413676 A 0.7191561 380 143
rs531099-119.1_T_R_114 0.5583507 B 0.6258751 302 236

Total number of rows: 5858

Table truncated, full table size 324 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap