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Sample GSM117531 Query DataSets for GSM117531
Status Public on Sep 01, 2006
Title N_P_124_260
Sample type genomic
 
Source name Paraffin Normal DNA from patient 124
Organism Homo sapiens
Characteristics Colorectal cancer
Extracted molecule genomic DNA
Extraction protocol DNA isolation was performed by salting out precipitation.
Label Cy3/Cy5
Label protocol DNA was prepared according to the standard Illumina protocol from 4 x 250 ng of DNA
 
Description Genotype and allele specfic intensity of leukocyte DNA
Data processing GenCall 6.0.0.7
 
Submission date Jun 30, 2006
Last update date Aug 17, 2006
Contact name Jan Oosting
Phone +31 71 5266619
Organization name Leiden University Medical Center
Department Pathology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL3896
Series (1)
GSE5347 High Resolution Copy Number Analysis of Paraffin Embedded Archival Tissue Using SNP BeadArrays

Data table header descriptions
ID_REF
VALUE Gencall score, sample specific quality score for genotype
GENOTYPE Genotype A,B,H
GTS Gentrain score, experiment wide quality score for genotype
GREEN Green/Cy3 Intensity
RED Red/Cy5 Intensity

Data table
ID_REF VALUE GENOTYPE GTS GREEN RED
rs884080-116.3_B_R_62439 0.6756822 B 0.7251126 502 889
rs2017143-119.1_T_R_20 0.5480905 H 0.5881996 326 305
rs2840531-119.1_T_R_484358 0.407124 B 0.624593 395 404
rs2477703-119.1_B_F_484359 0.6474125 A 0.7376912 558 171
rs734999-119.1_B_F_484360 0.5305567 H 0.56937 394 266
rs2377041-116_B_R_484361 0.3024343 B 0.3887495 405 267
rs2606418-119.1_B_R_484363 0.6360207 A 0.7694991 335 154
rs2027262-111_B_F_484364 0.7994305 A 0.8579134 531 160
rs2981881-116.3_T_F_484365 0.5337341 H 0.5727799 305 178
rs7534363-116.2_B_F_484367 0.3685715 A 0.5650495 1028 186
rs2065525-119.1_B_R_484368 0.4991325 H 0.535647 651 568
rs2821039-119.1_T_R_484369 0.6058916 B 0.6991151 322 240
rs878063-119.1_T_R_484370 0.3771549 H 0.4047459 443 225
rs1870509-119.1_T_R_1039909 0.3108561 H 0.4388416 307 152
rs2035453-94.3_T_R_1039639 0.7179574 B 0.7704801 417 412
rs557477-119.1_B_F_1040102 0.7864739 H 0.844009 317 162
rs912991-119.1_T_F_1039773 0.5246172 A 0.5941417 712 198
rs1570964-119.1_B_F_1039413 0.5248517 H 0.5632477 290 156
rs729206-119.1_B_R_1039926 0.437668 A 0.4698966 387 161
rs531099-119.1_T_R_114 0.550437 B 0.6004133 333 278

Total number of rows: 5858

Table truncated, full table size 328 Kbytes.




Supplementary data files not provided
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