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Sample GSM117540 Query DataSets for GSM117540
Status Public on Sep 01, 2006
Title N_B_44_260
Sample type genomic
 
Source name Leukocyte DNA from patient 44
Organism Homo sapiens
Characteristics Colorectal cancer
Extracted molecule genomic DNA
Extraction protocol DNA isolation was performed by salting out precipitation.
Label Cy3/Cy5
Label protocol DNA was prepared according to the standard Illumina protocol from 4 x 250 ng of DNA
 
Description Genotype and allele specfic intensity of leukocyte DNA
Data processing GenCall 6.0.0.7
 
Submission date Jun 30, 2006
Last update date Aug 17, 2006
Contact name Jan Oosting
Phone +31 71 5266619
Organization name Leiden University Medical Center
Department Pathology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL3896
Series (1)
GSE5347 High Resolution Copy Number Analysis of Paraffin Embedded Archival Tissue Using SNP BeadArrays

Data table header descriptions
ID_REF
VALUE Gencall score, sample specific quality score for genotype
GENOTYPE Genotype A,B,H
GTS Gentrain score, experiment wide quality score for genotype
GREEN Green/Cy3 Intensity
RED Red/Cy5 Intensity

Data table
ID_REF VALUE GENOTYPE GTS GREEN RED
rs884080-116.3_B_R_62439 0.678984 H 0.7251126 4390 6872
rs2017143-119.1_T_R_20 0.5507808 A 0.5881996 4182 468
rs2840531-119.1_T_R_484358 0.4094011 B 0.624593 565 19046
rs2477703-119.1_B_F_484359 0.6543568 A 0.7376912 13454 1247
rs734999-119.1_B_F_484360 0.5331491 H 0.56937 5953 4324
rs2377041-116_B_R_484361 0.3640161 B 0.3887495 6017 13628
rs2606418-119.1_B_R_484363 0.7205468 A 0.7694991 12779 1039
rs2027262-111_B_F_484364 0.8033366 H 0.8579134 6473 10514
rs2981881-116.3_T_F_484365 0.5363421 A 0.5727799 7975 811
rs7534363-116.2_B_F_484367 0.3703724 A 0.5650495 24987 1776
rs2065525-119.1_B_R_484368 0.501564 B 0.535647 735 19678
rs2821039-119.1_T_R_484369 0.6215079 B 0.6991151 725 16668
rs878063-119.1_T_R_484370 0.3545166 A 0.4047459 6136 1726
rs1870509-119.1_T_R_1039909 0.4109243 H 0.4388416 1491 3839
rs2035453-94.3_T_R_1039639 0.7214645 H 0.7704801 4732 7205
rs557477-119.1_B_F_1040102 0.7903167 H 0.844009 2122 2930
rs912991-119.1_T_F_1039773 0.5532394 A 0.5941417 9369 1112
rs1570964-119.1_B_F_1039413 0.5274163 H 0.5632477 957 2745
rs729206-119.1_B_R_1039926 0.4399779 A 0.4698966 7945 689
rs531099-119.1_T_R_114 0.5622138 A 0.6004133 11231 1219

Total number of rows: 5858

Table truncated, full table size 331 Kbytes.




Supplementary data files not provided
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