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Sample GSM117525 Query DataSets for GSM117525
Status Public on Sep 01, 2006
Title N_P_514_260
Sample type genomic
 
Source name Paraffin Normal DNA from patient 514
Organism Homo sapiens
Characteristics Colorectal cancer
Extracted molecule genomic DNA
Extraction protocol DNA isolation was performed by salting out precipitation.
Label Cy3/Cy5
Label protocol DNA was prepared according to the standard Illumina protocol from 4 x 250 ng of DNA
 
Description Genotype and allele specfic intensity of leukocyte DNA
Data processing GenCall 6.0.0.7
 
Submission date Jun 30, 2006
Last update date Aug 17, 2006
Contact name Jan Oosting
Phone +31 71 5266619
Organization name Leiden University Medical Center
Department Pathology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL3896
Series (1)
GSE5347 High Resolution Copy Number Analysis of Paraffin Embedded Archival Tissue Using SNP BeadArrays

Data table header descriptions
ID_REF
VALUE Gencall score, sample specific quality score for genotype
GENOTYPE Genotype A,B,H
GTS Gentrain score, experiment wide quality score for genotype
GREEN Green/Cy3 Intensity
RED Red/Cy5 Intensity

Data table
ID_REF VALUE GENOTYPE GTS GREEN RED
rs884080-116.3_B_R_62439 0.6755276 H 0.7251126 2686 2646
rs2017143-119.1_T_R_20 0.5479771 H 0.5881996 804 981
rs2840531-119.1_T_R_484358 0.4073086 B 0.624593 1897 3856
rs2477703-119.1_B_F_484359 0.6394635 A 0.7376912 4236 610
rs734999-119.1_B_F_484360 0.5296376 B 0.56937 691 917
rs2377041-116_B_R_484361 0.3621658 A 0.3887495 4667 745
rs2606418-119.1_B_R_484363 0.7153417 A 0.7694991 2915 1122
rs2027262-111_B_F_484364 0.7992473 A 0.8579134 3778 536
rs2981881-116.3_T_F_484365 0.5336118 H 0.5727799 1030 953
rs7534363-116.2_B_F_484367 0.368487 A 0.5650495 10349 927
rs2065525-119.1_B_R_484368 0.4990182 H 0.535647 6250 5768
rs2821039-119.1_T_R_484369 0.5807957 B 0.6991151 1104 1775
rs878063-119.1_T_R_484370 0.3770655 H 0.4047459 2540 865
rs1870509-119.1_T_R_1039909 0.4088325 H 0.4388416 588 580
rs2035453-94.3_T_R_1039639 0.7177928 H 0.7704801 2849 1792
rs557477-119.1_B_F_1040102 0.7862917 A 0.844009 1200 225
rs912991-119.1_T_F_1039773 0.5535128 H 0.5941417 4026 2151
rs1570964-119.1_B_F_1039413 0.1690455 B 0.5632477 489 392
rs729206-119.1_B_R_1039926 0.4377638 B 0.4698966 1774 1449
rs531099-119.1_T_R_114 0.5593556 H 0.6004133 3574 1743

Total number of rows: 5858

Table truncated, full table size 330 Kbytes.




Supplementary data files not provided
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