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Sample GSM117861 Query DataSets for GSM117861
Status Public on Sep 01, 2006
Title N_B_106_201
Sample type genomic
 
Source name Leukocyte DNA from patient 106
Organism Homo sapiens
Characteristics Colorectal cancer
Low intensity replicate
Extracted molecule genomic DNA
Extraction protocol DNA isolation was performed by salting out precipitation.
Label Cy3/Cy5
Label protocol DNA was prepared according to the standard Illumina protocol from 4 x 250 ng of DNA
 
Description Genotype and allele specfic intensity of leukocyte DNA
Data processing GenCall 6.0.0.7
 
Submission date Jun 30, 2006
Last update date Jun 30, 2013
Contact name Jan Oosting
Phone +31 71 5266619
Organization name Leiden University Medical Center
Department Pathology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL3896
Series (1)
GSE5347 High Resolution Copy Number Analysis of Paraffin Embedded Archival Tissue Using SNP BeadArrays

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
GENOTYPE Genotype A,B,H
GTS Gentrain score, experiment wide quality score for genotype
GREEN Green/Cy3 Intensity
RED Red/Cy5 Intensity

Data table
ID_REF VALUE GENOTYPE GTS GREEN RED
rs884080-116.3_B_R_62439 0.7273181 H 0.7736175 378 215
rs2017143-119.1_T_R_20 0.735266 A 0.7820713 362 145
rs2840531-119.1_T_R_484358 0.7432792 B 0.8322048 295 389
rs2477703-119.1_B_F_484359 0.4824714 A 0.5131844 397 146
rs734999-119.1_B_F_484360 0.4920314 H 0.523353 370 198
rs2377041-116_B_R_484361 0.5919068 H 0.6627223 453 217
rs2606418-119.1_B_R_484363 0.8302133 A 0.8830628 399 146
rs2027262-111_B_F_484364 0.8246791 A 0.8771762 433 145
rs2981881-116.3_T_F_484365 0.6763489 H 0.7194037 328 193
rs7534363-116.2_B_F_484367 0.3961584 A 0.601967 731 140
rs2065525-119.1_B_R_484368 0.4941358 H 0.5255914 655 213
rs2821039-119.1_T_R_484369 0.5076118 H 0.5399252 352 185
rs878063-119.1_T_R_484370 0.4675591 H 0.4973229 349 223
rs1870509-119.1_T_R_1039909 0.4087288 H 0.4347475 295 158
rs2035453-94.3_T_R_1039639 0.3936047 H 0.4186607 554 213
rs557477-119.1_B_F_1040102 0.3760737 A 0.5076731 393 148
rs912991-119.1_T_F_1039773 0.6531562 A 0.6951661 548 150
rs1570964-119.1_B_F_1039413 0.4878038 A 0.5242264 318 139
rs729206-119.1_B_R_1039926 0.6414722 A 0.7191561 426 142
rs531099-119.1_T_R_114 0.5884178 H 0.6258751 486 196

Total number of rows: 5858

Table truncated, full table size 323 Kbytes.




Supplementary data files not provided
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