NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM117539 Query DataSets for GSM117539
Status Public on Sep 01, 2006
Title N_B_108_260
Sample type genomic
 
Source name Leukocyte DNA from patient 108
Organism Homo sapiens
Characteristics Colorectal cancer
Extracted molecule genomic DNA
Extraction protocol DNA isolation was performed by salting out precipitation.
Label Cy3/Cy5
Label protocol DNA was prepared according to the standard Illumina protocol from 4 x 250 ng of DNA
 
Description Genotype and allele specfic intensity of leukocyte DNA
Data processing GenCall 6.0.0.7
 
Submission date Jun 30, 2006
Last update date Aug 17, 2006
Contact name Jan Oosting
Phone +31 71 5266619
Organization name Leiden University Medical Center
Department Pathology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL3896
Series (1)
GSE5347 High Resolution Copy Number Analysis of Paraffin Embedded Archival Tissue Using SNP BeadArrays

Data table header descriptions
ID_REF
VALUE Gencall score, sample specific quality score for genotype
GENOTYPE Genotype A,B,H
GTS Gentrain score, experiment wide quality score for genotype
GREEN Green/Cy3 Intensity
RED Red/Cy5 Intensity

Data table
ID_REF VALUE GENOTYPE GTS GREEN RED
rs884080-116.3_B_R_62439 0.6790149 B 0.7251126 696 13068
rs2017143-119.1_T_R_20 0.5508078 A 0.5881996 3296 375
rs2840531-119.1_T_R_484358 0.4094213 B 0.624593 755 20762
rs2477703-119.1_B_F_484359 0.6562565 H 0.7376912 9548 7368
rs734999-119.1_B_F_484360 0.5317324 A 0.56937 11175 836
rs2377041-116_B_R_484361 0.36403 B 0.3887495 7401 13658
rs2606418-119.1_B_R_484363 0.7205821 B 0.7694991 698 15928
rs2027262-111_B_F_484364 0.803376 A 0.8579134 15167 804
rs2981881-116.3_T_F_484365 0.5362636 B 0.5727799 763 14020
rs7534363-116.2_B_F_484367 0.3703906 A 0.5650495 23943 1470
rs2065525-119.1_B_R_484368 0.501596 H 0.535647 8522 11773
rs2821039-119.1_T_R_484369 0.6219388 H 0.6991151 8440 7603
rs878063-119.1_T_R_484370 0.3788904 B 0.4047459 542 11296
rs1870509-119.1_T_R_1039909 0.4109445 H 0.4388416 1668 4056
rs2035453-94.3_T_R_1039639 0.7215008 B 0.7704801 1051 12120
rs557477-119.1_B_F_1040102 0.7903466 B 0.844009 465 5840
rs912991-119.1_T_F_1039773 0.5563436 B 0.5941417 821 12008
rs1570964-119.1_B_F_1039413 0.5231041 B 0.5632477 418 4852
rs729206-119.1_B_R_1039926 0.4399923 A 0.4698966 9284 814
rs531099-119.1_T_R_114 0.5590302 B 0.6004133 642 14846

Total number of rows: 5858

Table truncated, full table size 331 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap