The MG-U74 set includes 3 arrays with a total of 36899 entries and was indexed 29-Jan-2002. The set represents ~36,000 full length genes and EST clusters derived from sequence clusters in Build 74 of the Mouse Unigene Database.
June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32 June 24, 2016: annotation table updated with netaffx build 35
Combined analysis of oligonucleotide microarray data from transgenic and knockout mice identifies direct SREBP target genes
Data table header descriptions
ID
Affymetrix Probe Set ID
GB_ACC
GenBank Accession Number
SPOT_ID
identifies controls
Species Scientific Name
The genus and species of the organism represented by the probe set.
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source
The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID
The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title
Title of Gene represented by the probe set.
Gene Symbol
A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID
Entrez Gene Database UID
RefSeq Transcript ID
References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process
Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component
Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function
Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
0006200 // ATP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006855 // drug transmembrane transport // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010039 // response to iron ion // inferred from electronic annotation /// 0015893 // drug transport // not recorded /// 0042908 // xenobiotic transport // /// 0046415 // urate metabolic process // not recorded /// 0046618 // drug export // not recorded /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051593 // response to folic acid // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // not recorded
0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008559 // xenobiotic-transporting ATPase activity // /// 0015238 // drug transmembrane transporter activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046983 // protein dimerization activity // not recorded
0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
0000209 // protein polyubiquitination // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006513 // protein monoubiquitination // not recorded /// 0006974 // cellular response to DNA damage stimulus // not recorded /// 0009411 // response to UV // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019985 // translesion synthesis // not recorded /// 0031572 // G2 DNA damage checkpoint // not recorded /// 0051726 // regulation of cell cycle // not recorded
0005634 // nucleus // not recorded /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031464 // Cul4A-RING E3 ubiquitin ligase complex // not recorded /// 0031465 // Cul4B-RING E3 ubiquitin ligase complex // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded
0004842 // ubiquitin-protein transferase activity // not recorded
0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007032 // endosome organization // inferred from direct assay /// 0007032 // endosome organization // not recorded /// 0007040 // lysosome organization // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0046718 // viral entry into host cell // inferred from mutant phenotype
0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005884 // actin filament // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0031902 // late endosome membrane // inferred from electronic annotation
0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation
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