NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM89499 Query DataSets for GSM89499
Status Public on Jan 31, 2006
Title AND-TCR transgenic mouse first hybridization_MG-U74Cv2
Sample type RNA
 
Source name thymocytes
Organism Mus musculus
Characteristics H-2b AND-TCR-transgenic thymocytes
Extracted molecule total RNA
Label biotin
Label protocol 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Total adult thymocytes from AND-TCR transgenic mouse that were positively selected in the H-2b background
Data processing Affymetrix Microarray Suite version 4
 
Submission date Dec 27, 2005
Last update date Dec 27, 2005
Contact name Tsutomu Ohta
E-mail(s) [email protected]
Phone +81-3-3542-2511(ext. 3142)
Fax +81-3-3248-1631
URL http://www.ncc.go.jp/index.html
Organization name National Cancer Center Research Institute
Department Medical Genomics Center
Street address 5-1-1 Tsukiji
City Chuo-ku
State/province Tokyo
ZIP/Postal code 104-0045
Country Japan
 
Platform ID GPL83
Series (1)
GSE3909 Oligonucleotide microarray analysis of H-2b AND-TCR-transgenic thymocytes and C57BL/6 thymocytes

Data table header descriptions
ID_REF
VALUE MAS4-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-MurIL2_at -579 A
AFFX-MurIL10_at 1130.2 A
AFFX-MurIL4_at -208 A
AFFX-MurFAS_at 7398.5 P
AFFX-BioB-5_at 23029.1 P
AFFX-BioB-M_at 39757.3 P
AFFX-BioB-3_at 29519.2 P
AFFX-BioC-5_at 30484.4 P
AFFX-BioC-3_at 35285.5 P
AFFX-BioDn-5_at 28015.7 P
AFFX-BioDn-3_at 91915.8 P
AFFX-CreX-5_at 310699.1 P
AFFX-CreX-3_at 352233.8 P
AFFX-BioB-5_st 686.7 A
AFFX-BioB-M_st 931.6 M
AFFX-BioB-3_st 771.2 A
AFFX-BioC-5_st -1288.2 A
AFFX-BioC-3_st -199.4 A
AFFX-BioDn-5_st 5643.5 A
AFFX-BioDn-3_st 2706.2 P

Total number of rows: 11934

Table truncated, full table size 224 Kbytes.




Supplementary file Size Download File type/resource
GSM89499.CEL.gz 2.7 Mb (ftp)(http) CEL
GSM89499.EXP.gz 416 b (ftp)(http) EXP

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap