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Status
Public on Nov 07, 2003
Title
mouse_testis_tubular_somatic_cells_GPL83
Sample type
RNA
Source name
19 day old testis, tubular somatic cells
Organism
Mus musculus Extracted molecule
total RNA
Description
RNA preparation was performed using RNA Stat-60 (Teltest, Friendswood, TX), according to the manufacturer’s protocol. 50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 7.036).
Submission date
Sep 09, 2003
Last update date
Oct 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
[email protected] Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL83 Series (2)
GSE640 Spermatogenesis
GSE829 Laminin binding/non-binding germ cells
Data table header descriptions ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
49.7
A
0.617401
AFFX-MurIL10_at
30.2
A
0.617401
AFFX-MurIL4_at
14.5
A
0.672921
AFFX-MurFAS_at
448.3
P
0.004017
AFFX-BioB-5_at
1147.4
P
0.002867
AFFX-BioB-M_at
2462.1
P
0.000044
AFFX-BioB-3_at
1405
P
0.000052
AFFX-BioC-5_at
2816.4
P
0.000169
AFFX-BioC-3_at
2488
P
0.000044
AFFX-BioDn-5_at
3135.3
P
0.000044
AFFX-BioDn-3_at
13476.6
P
0.000052
AFFX-CreX-5_at
51571.1
P
0.000044
AFFX-CreX-3_at
41567.5
P
0.000044
AFFX-BioB-5_st
241
A
0.116113
AFFX-BioB-M_st
273.4
A
0.147939
AFFX-BioB-3_st
459.4
A
0.102165
AFFX-BioC-5_st
47.8
A
0.783476
AFFX-BioC-3_st
74.9
A
0.287743
AFFX-BioDn-5_st
434.5
A
0.078002
AFFX-BioDn-3_st
462.1
P
0.004484
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