GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Platform GPL16199

Query DataSets for GPL16199

Status

Public on Mar 03, 2013

Title

Agilent-038112 mouse miRNA microarray, Release 18.0 (Feature Number version)

Technology type

in situ oligonucleotide

Distribution

commercial

Organism

Mus musculus

Manufacturer

Agilent Technologies

Manufacture protocol

see manufacturer's web site at http://www.agilent.com/

Description

Arrays of this design have barcodes that begin with 16038112 or 2538112.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

Submission date

Oct 19, 2012

Last update date

Oct 22, 2014

Organization

Agilent Technologies

E-mail(s)

[email protected]

Phone

877-424-4536

URL

http://www.agilent.com

Department

Street address

City

Palo Alto

State/province

ZIP/Postal code

94304

Country

USA

Samples (53)

More...

GSM1023143, GSM1023144, GSM1023145, GSM1023146, GSM1023147, GSM1023148

Series (5)

More...

GSE41723	Met synergizes with p53 loss to induce mammary tumors that possess features of claudin-low breast cancer (miRNA expression data).
GSE41748	Met synergizes with p53 loss to induce mammary tumors that possess features of claudin-low breast cancer
GSE65260	Neutral sphingomyelinase 2 (nSMase2)-dependent exosomal transfer of angiogenic microRNAs regulate cancer cell metastasis

Relations

Alternative to

GPL19324

Data table header descriptions
ID	Agilent feature number
COL	Column
ROW	Row
PROBE ID
CONTROL_TYPE	Control type
miRNA_ID	Gene Symbol
GENE_NAME	Gene Name
ACCESSION_STRING	Accession String
CHROMOSOMAL_LOCATION	Chromosomal Location
SPOT_ID	Spot identifier

Data table
ID	COL	ROW	PROBE ID	CONTROL_TYPE	miRNA_ID	GENE_NAME	ACCESSION_STRING	CHROMOSOMAL_LOCATION	SPOT_ID
1	192	328	miRBrightCorner30	pos					CONTROL
2	192	326	Blank	pos					BLANK
3	192	324	Blank	pos					BLANK
4	192	322	Blank	pos					BLANK
5	192	320	Blank	pos					BLANK
6	192	318	Blank	pos					BLANK
7	192	316	Blank	pos					BLANK
8	192	314	Blank	pos					BLANK
9	192	312	Blank	pos					BLANK
10	192	310	Blank	pos					BLANK
11	192	308	A_54_P00005756	FALSE	mmu-miR-5621-3p	mmu-miR-5621-3p	mir\|mmu-miR-5621-3p\|mir\|MIMAT0022370	chr11:115657188-115657200
12	192	306	A_54_P00005216	FALSE	mmu-miR-3113-3p	mmu-miR-3113-3p	mir\|mmu-miR-3113-3p\|mir\|MIMAT0014960\|mir\|mmu-miR-3113*_v17.0\|mir\|MIMAT0014960	"chrX:148294155-148294168,chrX:148294155-148294168"
13	192	304	A_54_P3008	FALSE	mmu-miR-881-3p	mmu-miR-881-3p	mir\|mmu-miR-881-3p\|mir\|MIMAT0004846\|mir\|mmu-miR-881_v17.0\|mir\|MIMAT0004846	"chrX:064055186-064055166,chrX:064055186-064055166"
14	192	302	A_54_P00005725	FALSE	mmu-miR-449c-3p	mmu-miR-449c-3p	mir\|mmu-miR-449c-3p\|mir\|MIMAT0022715	chr13:113826263-113826278
15	192	300		ignore					UNKNOWN
16	192	298	A_54_P3289	FALSE	mmu-miR-125b-2-3p	mmu-miR-125b-2-3p	mir\|mmu-miR-125b-2-3p\|mir\|MIMAT0004529\|mir\|mmu-miR-125b*_v15.0\|mir\|MIMAT0004529	"chr16:077646570-077646584,chr16:077646570-077646584"
17	192	296	A_54_P00005339	FALSE	mmu-miR-3068-5p	mmu-miR-3068-5p	mir\|mmu-miR-3068-5p\|mir\|MIMAT0014842\|mir\|mmu-miR-3068_v17.0\|mir\|MIMAT0014842	"chr12:088778662-088778646,chr12:088778662-088778646"
18	192	294	A_54_P2786	FALSE	mmu-miR-532-3p	mmu-miR-532-3p	mir\|mmu-miR-532-3p\|mir\|MIMAT0004781	chrX:6825606-6825594
19	192	292		ignore					UNKNOWN
20	192	290		ignore					UNKNOWN

Total number of rows: 62976

Table truncated, full table size 8387 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary data files not provided