The RG-U34 set includes 3 arrays with a total of 26379 entries and was indexed 29-Jan-2002. The set includes ~7,000 known genes and >17,000 EST clusters. The A array contains probes derived from all full-length or annotated genes as well as thousands of EST clusters. The B and C arrays contain only EST clusters.
Complement activation in the peripheral nervous system following the spinal nerve ligation model of neuropathic pain
Data table header descriptions
ID
Affymetrix Probe Set ID
GB_ACC
GenBank Accession Number
SPOT_ID
identifies controls
Species Scientific Name
The genus and species of the organism represented by the probe set.
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source
The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID
The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title
Title of Gene represented by the probe set.
Gene Symbol
A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID
Entrez Gene Database UID
RefSeq Transcript ID
References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process
Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component
Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function
Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
0008380 // RNA splicing // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded
0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded
0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded
0006936 // muscle contraction // not recorded /// 0043462 // regulation of ATPase activity // not recorded
0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation
0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // not recorded
0001503 // ossification // inferred from mutant phenotype /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0003006 // developmental process involved in reproduction // inferred from electronic annotation /// 0003006 // developmental process involved in reproduction // not recorded /// 0007275 // multicellular organismal development // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0030225 // macrophage differentiation // inferred from expression pattern /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded /// 0030316 // osteoclast differentiation // inferred from mutant phenotype /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032946 // positive regulation of mononuclear cell proliferation // inferred from electronic annotation /// 0032946 // positive regulation of mononuclear cell proliferation // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042476 // odontogenesis // inferred from mutant phenotype /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // not recorded /// 0045651 // positive regulation of macrophage differentiation // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045657 // positive regulation of monocyte differentiation // inferred from electronic annotation /// 0045657 // positive regulation of monocyte differentiation // not recorded /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060611 // mammary gland fat development // inferred from electronic annotation /// 0060611 // mammary gland fat development // not recorded /// 0060763 // mammary duct terminal end bud growth // inferred from electronic annotation /// 0060763 // mammary duct terminal end bud growth // not recorded
0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from electronic annotation /// 0043235 // receptor complex // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded
0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005157 // macrophage colony-stimulating factor receptor binding // inferred from electronic annotation /// 0005157 // macrophage colony-stimulating factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation
0006457 // protein folding // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation
0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded
0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation
0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded
0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation
0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded
0000281 // cytokinesis after mitosis // inferred from electronic annotation /// 0000281 // cytokinesis after mitosis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // not recorded /// 0031396 // regulation of protein ubiquitination // not recorded /// 0031396 // regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded
0000792 // heterochromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005938 // cell cortex // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0016605 // PML body // not recorded /// 0016605 // PML body // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from direct assay /// 0044297 // cell body // inferred from direct assay
0002039 // p53 binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0050681 // androgen receptor binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // not recorded
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