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Sample GSM74054 Query DataSets for GSM74054
Status Public on Sep 13, 2005
Title Aorta 19 days post coitum chip C
Sample type RNA
 
Source name Aorta
Organism Rattus norvegicus
Characteristics Aorta
Extracted molecule total RNA
Label Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, rev.3. 2001)
 
Description Isolation of rat DA and Ao. Rats were mated for 24 hours and the end of this period was marked as day zero of pregnancy. Near-term fetuses (gestational age, 19 days) were delivered by Cesarean section from a normoxic or hyperoxic dam, while newborns were used 3 hours after vaginal delivery. Pregnant rats were made hyperoxic to reproduce the neonatal condition in utero. They breathed 100% oxygen inside a box for 3 hours. All animals were killed by cervical dislocation and, to isolate the DA and Ao (arch and thoracic sections), were secured inside a chamber filled with ice-cold Krebs medium through which was bubbled a gas mixture with 2.5 (fetus) or 12.5% (newborn) oxygen. Special care was taken to obtain the blood vessels free of any adhering tissue.
Data processing Original Affymetrix output files
 
Submission date Sep 11, 2005
Last update date Sep 12, 2005
Contact name Flavio Coceani
E-mail(s) [email protected]
Phone +39 050 883327
Fax +39 050 883215
Organization name Scuola Superiore S. Anna
Department Settore di Scienze Mediche
Street address Piazza Martiri della Libertà, 33
City Pisa
ZIP/Postal code 56127
Country Italy
 
Platform ID GPL87
Series (1)
GSE3290 Expression profiling in perinatal Ductus Arteriosus (DA) and Aorta (Ao).

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Value
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 22.4 A 0.860518
AFFX-MurIL10_at 25.4 A 0.631562
AFFX-MurIL4_at 10 A 0.783476
AFFX-MurFAS_at 29.5 A 0.58862
AFFX-BioB-5_at 504.6 A 0.102165
AFFX-BioB-M_at 814.4 P 0.000857
AFFX-BioB-3_at 291.7 P 0.003212
AFFX-BioC-5_at 1367.6 P 0.000169
AFFX-BioC-3_at 812.3 P 0.000857
AFFX-BioDn-5_at 1275.3 P 0.000147
AFFX-BioDn-3_at 9081.4 P 0.000169
AFFX-CreX-5_at 14034.6 P 0.000044
AFFX-CreX-3_at 21217.6 P 0.000044
AFFX-BioB-5_st 101.1 A 0.250796
AFFX-BioB-M_st 44.2 A 0.645547
AFFX-BioB-3_st 53.1 A 0.783476
AFFX-BioC-5_st 22.5 A 0.960339
AFFX-BioC-3_st 16 A 0.824672
AFFX-BioDn-5_st 204.1 A 0.262827
AFFX-BioDn-3_st 188.1 A 0.195266

Total number of rows: 8789

Table truncated, full table size 270 Kbytes.




Supplementary data files not provided

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