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Sample GSM30987 Query DataSets for GSM30987
Status Public on Sep 30, 2004
Title F1#159 U34C
Sample type RNA
 
Source name Heart, Left Ventricle
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description RNA was extracted from the left ventricle of the heart, taken from a single 15 week old inbred rat that was maintained under specific pathogen free conditions. Target cRNA was prepared using the Enzo Bioarray High Yield RNA Transcript Labeling Kit (Enzo Diagnostics, Farmingdale, NY), purified on a column (Rneasy mini kit, Qiagen), and hybridized to commercially available Affymetrix rat GeneChips arrays according to protocols recommended by the manufacturers. Data was analyzed using the GeneChip Expression Analysis Software (Affymetrix).
Keywords = quantitative real-time RT-PCR
Keywords = insulin receptor substrate 2 (Irs2)
Keywords = phosphatidylinositol 3-kinase
Keywords = regulatory subunit 1
Keywords = (Pik3r1)
Keywords = endurance running
Keywords = treadmill running
 
Submission date Sep 24, 2004
Last update date May 27, 2005
Contact name Justin A. Ways
E-mail(s) [email protected]
Phone 419-383-4150
Organization name Medical College of Ohio
Department Physiology and Cardiovascular Genomics
Street address 3035 Arlington Ave.
City Toledo
State/province OH
ZIP/Postal code 43614
Country USA
 
Platform ID GPL87
Series (1)
GSE1795 Expression Profiling of DA, COP, and F1(COPxDA) rat left ventricles

Data table header descriptions
ID_REF
VALUE normalized signal representing quantity of transcript
ABS_CALL absolute detection call where P=present, A=absent, and M=marginal
DETECTION P-VALUE measure of the significance of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 6.4 A 0.891021
AFFX-MurIL10_at 5.3 A 0.544587
AFFX-MurIL4_at 0.8 A 0.963431
AFFX-MurFAS_at 14.7 A 0.425962
AFFX-BioB-5_at 186.1 P 0.012547
AFFX-BioB-M_at 256.9 P 0.000581
AFFX-BioB-3_at 160.6 P 0.00762
AFFX-BioC-5_at 535.6 P 0.000169
AFFX-BioC-3_at 333.2 P 0.000127
AFFX-BioDn-5_at 447.7 P 0.000857
AFFX-BioDn-3_at 2807.1 P 0.000169
AFFX-CreX-5_at 6634.5 P 0.000044
AFFX-CreX-3_at 7971.7 P 0.000044
AFFX-BioB-5_st 21.2 A 0.368438
AFFX-BioB-M_st 11.9 A 0.699394
AFFX-BioB-3_st 12.6 A 0.916408
AFFX-BioC-5_st 4.9 A 0.891021
AFFX-BioC-3_st 4.2 A 0.883887
AFFX-BioDn-5_st 23.3 A 0.262827
AFFX-BioDn-3_st 96 M 0.054213

Total number of rows: 8789

Table truncated, full table size 265 Kbytes.




Supplementary data files not provided

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