U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Nop56 Nop56 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42633, updated on 9-Dec-2024

    Summary

    Official Symbol
    Nop56provided by FlyBase
    Official Full Name
    Nop56provided by FlyBase
    Primary source
    FLYBASE:FBgn0038964
    Locus tag
    Dmel_CG13849
    See related
    AllianceGenome:FB:FBgn0038964
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG13849; Dmel\CG13849; DmNop56; Dnop56; nop56
    Summary
    Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Predicted to be part of box C/D methylation guide snoRNP complex and small-subunit processome. Is expressed in several structures, including adult head; adult heart; lamina; lamina anlage; and stem cell. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 36. Orthologous to human NOP56 (NOP56 ribonucleoprotein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Nop56 in Genome Data Viewer
    Location:
    94A12-94A12; 3-74 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (22419095..22421068, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (18244817..18246790, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene liquid facets-Related Neighboring gene mob as tumor suppressor Neighboring gene prolonged depolarization afterpotential (PDA) is not apparent

    Genomic regions, transcripts, and products

    Interactions

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables snoRNA binding  
    enables snoRNA binding  
    enables snoRNA binding  
    Process Evidence Code Pubs
    involved_in rRNA processing  
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex  
    part_of box C/D methylation guide snoRNP complex  
    part_of small-subunit processome  
    part_of small-subunit processome  

    General protein information

    Preferred Names
    Nop56
    Names
    CG13849-PA
    Nop56-PA

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      22419095..22421068 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142783.2 → NP_651040.3  Nop56 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651040.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IGT5, Q95WY3, Q9VD11
      Related
      FBpp0083625, FBtr0084230
      Conserved Domains (3) summary
      smart00931
      Location:169 → 220
      NOSIC; NOSIC (NUC001) domain
      COG1498
      Location:47 → 430
      SIK1; RNA processing factor Prp31, contains Nop domain [Translation, ribosomal structure and biogenesis]
      pfam08156
      Location:5 → 70
      NOP5NT; NOP5NT (NUC127) domain
    External link. Please review our privacy policy.