Escherichia coli (ID 701970) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJNA701970 ID: 701970

Escherichia coli

Escherichia coli isolates from urinary tract infection and from the gut of inpatients

See Genome Information for Escherichia coli

Navigate Across

9410 additional projects are related by organism.

This project aimed to sequence and compare the genome of Escherichia coli strains isolated from urinary tract infection (UTI) and E. coli strain present in the gut of hospitalized patients with and without UTI.

Accession	PRJNA701970
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Santos ACM et al., "Unveiling the Virulent Genotype and Unusual Biochemical Behavior of Escherichia coli ST59.", Appl Environ Microbiol, 2021 Jul 27;87(16):e0074321 Published online: Santos-Neto J et al., "Virulence Profile, Antibiotic Resistance, and Phylogenetic Relationships among Escherichia coli Strains Isolated from the Feces and Urine of Hospitalized Patients", Pathogens, 2022;11(12)
Grants	"COMPARATIVE ANALYSIS OF VIRULENCE CHARACTERISTICS OF DIARRHEIOGENIC Escherichia coli IN E. coli STRAINS ISOLATED FROM PATIENTS WITH DIFFERENT TYPES OF URINARY INFECTION" (Grant ID 2018/17353-7, Fundacao de Amparo a Pesquisa do Estado de Sao Paulo)
Submission	Registration date: 14-Mar-2021 Universidade Federal de Sao Paulo
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	49
SRA Experiments	49
Publications
PubMed	1
PMC	1
Other datasets
BioSample	49
Assembly	49

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Contig

Total

34
15
49

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_017353385.1	JAFMTP000000000	SAMN18221695	SMG017F3	Escherichia coli
GCA_022758865.1	JALECG000000000	SAMN26232719	SMG013U	Escherichia coli
GCA_022758845.1	JALECH000000000	SAMN22656218	SMG015U	Escherichia coli
GCA_022758815.1	JALECD000000000	SAMN22580334	SMG017F8	Escherichia coli
GCA_022758805.1	JALECE000000000	SAMN23384002	SMG007U	Escherichia coli
GCA_022758785.1	JALECF000000000	SAMN23390744	SMG008U	Escherichia coli
GCA_022758765.1	JALECC000000000	SAMN22580315	SMG017F2	Escherichia coli
GCA_022758745.1	JALEBY000000000	SAMN23429728	SMG014F11	Escherichia coli
GCA_022758725.1	JALECB000000000	SAMN22645457	SMG016F4a	Escherichia coli
GCA_022758705.1	JALECA000000000	SAMN22650189	SMG016F10	Escherichia coli
GCA_022758685.1	JALEBZ000000000	SAMN22645453	SMG016F1	Escherichia coli
GCA_022758665.1	JALEBW000000000	SAMN26233567	SMG012F1	Escherichia coli
GCA_022758645.1	JALEBX000000000	SAMN26233599	SMG012F3	Escherichia coli
GCA_022758625.1	JALEBV000000000	SAMN26232767	SMG011F7	Escherichia coli
GCA_022758595.1	JALEBT000000000	SAMN23404510	SMG009F1	Escherichia coli
GCA_022758585.1	JALEBU000000000	SAMN23404511	SMG009F5	Escherichia coli
GCA_022758565.1	JALEBS000000000	SAMN23404403	SMG008F1	Escherichia coli
GCA_022758545.1	JALEBR000000000	SAMN23385328	SMG007F7	Escherichia coli
GCA_022758525.1	JALEBO000000000	SAMN22580313	SMG017F1	Escherichia coli
GCA_022758505.1	JALEBQ000000000	SAMN23385281	SMG007F1	Escherichia coli
GCA_022758485.1	JALEBP000000000	SAMN26232721	SMG018F1	Escherichia coli
GCA_022758465.1	JALEBN000000000	SAMN26232715	SMG014F12	Escherichia coli
GCA_022758445.1	JALEBL000000000	SAMN26232720	SMG013F1	Escherichia coli
GCA_022758425.1	JALEBM000000000	SAMN26232718	SMG014F10	Escherichia coli
GCA_022758385.1	JALEBJ000000000	SAMN23405798	SMG010F1	Escherichia coli
GCA_022758395.1	JALEBK000000000	SAMN26234274	SMG012F6	Escherichia coli
GCA_022758365.1	JALEBI000000000	SAMN23404509	SMG008F11	Escherichia coli
GCA_022758895.1	JALECI000000000	SAMN22581297	SMG017U	Escherichia coli
GCA_022694415.1	JAKVTE000000000	SAMN23404508	SMG008F10	Escherichia coli
GCA_022694405.1	JAKVTD000000000	SAMN23404404	SMG008F9	Escherichia coli
GCA_022694385.1	JAKVTC000000000	SAMN23402391	SMG008F2	Escherichia coli
GCA_022694365.1	JAKVSZ000000000	SAMN23383043	SMG005F3	Escherichia coli
GCA_022694325.1	JAKVTA000000000	SAMN23383053	SMG006F1	Escherichia coli
GCA_022694335.1	JAKVTB000000000	SAMN23383875	SMG006F11	Escherichia coli
GCA_022694305.1	JAKVSY000000000	SAMN23383039	SMG005F2	Escherichia coli
GCA_022694285.1	JAKYWU000000000	SAMN23384458	SMG003F10	Escherichia coli
GCA_022694265.1	JAKVSX000000000	SAMN23383013	SMG004F8	Escherichia coli
GCA_022694245.1	JAKVSS000000000	SAMN21383595	SMG002F9	Escherichia coli
GCA_022694225.1	JAKVSW000000000	SAMN23383000	SMG004F1	Escherichia coli
GCA_022694205.1	JAKVSV000000000	SAMN21383753	SMG003F7	Escherichia coli
GCA_022694175.1	JAKVSU000000000	SAMN21383708	SMG003F3	Escherichia coli
GCA_022694165.1	JAKVSR000000000	SAMN21383417	SMG002F8	Escherichia coli
GCA_022694145.1	JAKVST000000000	SAMN21383679	SMG003F2	Escherichia coli
GCA_022694125.1	JAKVSQ000000000	SAMN21383416	SMG002F6	Escherichia coli
GCA_022694095.1	JAKVSO000000000	SAMN21383360	SMG002F4	Escherichia coli
GCA_022694085.1	JAKVSP000000000	SAMN21383387	SMG002F5	Escherichia coli
GCA_022694045.1	JAKVSM000000000	SAMN21382254	SMG001F2	Escherichia coli
GCA_022694035.1	JAKVSL000000000	SAMN21381419	SMG001F1	Escherichia coli
GCA_022694025.1	JAKVSN000000000	SAMN21382858	SMG001F6	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	18
Data volume, Mbytes	6488

BioProject

Result Filters

Display Settings:

Send to:

Escherichia coli

Escherichia coli isolates from urinary tract infection and from the gut of inpatients

Supplemental Content

Related information

Recent activity