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Escherichia coli strain SMG004F8, isolated from an inpatient without UTI

Identifiers
BioSample: SAMN23383013; Sample name: SMG004F8; SRA: SRS12547556
Organism
Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Package
Pathogen: clinical or host-associated; version 1.0
Attributes
strainSMG004F8
collected byUniversidade Federal de Sao Paulo
collection date2019-08
geographic locationBrazil: Sao Paulo
hostHomo sapiens
host diseasenot determined
isolation sourcerectal swab
latitude and longitude22.36448060 S 46.94347391 W
host age63
host sexfemale
pathotypeExPEC
serotypeO45:H45
Description

This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG004F8 was isolated from a rectal swab from an inpatient without urinary tract infection. This sequence refers to clone F8 from the patient SMG004. The other clone isolated from the rectal swab of the same inpatient is SMG04F1. TThe strain fulfils the molecular criterium to be classified as ExPEC.

BioProject
PRJNA701970 Escherichia coli
Retrieve all samples from this project

Submission
Universidade Federal de Sao Paulo, Ana Carolina Santos Gheller; 2021-11-22
Accession:
SAMN23383013
ID:
23383013

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