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Status
Public on Jun 01, 2010
Title
[stSmel_Mtra] SRL_SU Sinorhizobium meliloti/Medicago truncatula dual-genome SymbiosisChip, Affymetrix part number 510699
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organisms
Sinorhizobium meliloti ; Medicago truncatula Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's website
Description
The dual genome Affymetrix SymbiosisChip contains probe sets for S. meliloti ORFs annotated in 2001, intergenic regions over 150 bp, and ~10,000 probe sets corresponding to expressed sequence tags of the plant host, Medicago truncatula.
Web link
http://cmgm.stanford.edu/biology/long/genechip.htm Citation(s)
15542588 , 15220482 Submission date
Dec 07, 2009
Last update date
Feb 17, 2015
Contact name
Melanie J Barnett
Organization name
Stanford University
Department
Biology
Lab
Sharon R. Long
Street address
371 Jane Stanford Way
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Samples (269)
GSM480458 , GSM480459 , GSM480460 , GSM480461 , GSM480462 , GSM480463
GSM692567 ,
GSM692568 ,
GSM692569 ,
GSM692570 ,
GSM692571 ,
GSM692572 ,
GSM692573 ,
GSM692574 ,
GSM697630 ,
GSM697631 ,
GSM697632 ,
GSM697633 ,
GSM697634 ,
GSM697635 ,
GSM697636 ,
GSM697637 ,
GSM697638 ,
GSM776975 ,
GSM776976 ,
GSM776977 ,
GSM776978 ,
GSM776979 ,
GSM776980 ,
GSM883373 ,
GSM883374 ,
GSM883375 ,
GSM883376 ,
GSM883377 ,
GSM883378 ,
GSM883379 ,
GSM883380 ,
GSM883381 ,
GSM883382 ,
GSM883383 ,
GSM883384 ,
GSM883385 ,
GSM883386 ,
GSM883387 ,
GSM883388 ,
GSM883389 ,
GSM883390 ,
GSM883391 ,
GSM883392 ,
GSM883393 ,
GSM883394 ,
GSM883395 ,
GSM883396 ,
GSM883397 ,
GSM883398 ,
GSM883399 ,
GSM992687 ,
GSM992688 ,
GSM992689 ,
GSM992690 ,
GSM992691 ,
GSM992692 ,
GSM1065628 ,
GSM1065629 ,
GSM1065630 ,
GSM1065631 ,
GSM1065632 ,
GSM1065633 ,
GSM1065634 ,
GSM1065635 ,
GSM1065636 ,
GSM1065637 ,
GSM1065638 ,
GSM1065639 ,
GSM1065640 ,
GSM1065641 ,
GSM1065642 ,
GSM1065643 ,
GSM1065644 ,
GSM1065645 ,
GSM1065646 ,
GSM1299209 ,
GSM1299210 ,
GSM1299211 ,
GSM1299212 ,
GSM1299213 ,
GSM1299214 ,
GSM1299215 ,
GSM1299216 ,
GSM1299217 ,
GSM1299218 ,
GSM1299219 ,
GSM1299220 ,
GSM1299221 ,
GSM1299222 ,
GSM1299223 ,
GSM1299224 ,
GSM1299225 ,
GSM1299226 ,
GSM1299227 ,
GSM1299228 ,
GSM1299229 ,
GSM1299230 ,
GSM1299231 ,
GSM1299232 ,
GSM1507399 ,
GSM1507400 ,
GSM1507401 ,
GSM1507402 ,
GSM1507403 ,
GSM1507404 ,
GSM1507405 ,
GSM1507406 ,
GSM1507407 ,
GSM1507408 ,
GSM1507409 ,
GSM1507410 ,
GSM1507426 ,
GSM1507427 ,
GSM1507428 ,
GSM1507429 ,
GSM1507430 ,
GSM1507431 ,
GSM1507432 ,
GSM1507433 ,
GSM1507434 ,
GSM1507435 ,
GSM1507436 ,
GSM1507437 ,
GSM2691842 ,
GSM2691843 ,
GSM2691844 ,
GSM2691845 ,
GSM2691846 ,
GSM2691847 ,
GSM3084257 ,
GSM3084258 ,
GSM3084259 ,
GSM3084260 ,
GSM3084261 ,
GSM3084262 ,
GSM3084263 ,
GSM3084264 ,
GSM3084265 ,
GSM3084286 ,
GSM3084287 ,
GSM3084288 ,
GSM3084289 ,
GSM3084290 ,
GSM3084291 ,
GSM3084292 ,
GSM3084293 ,
GSM3084294 ,
GSM3245019 ,
GSM3245020 ,
GSM3245021 ,
GSM3245022 ,
GSM3245023 ,
GSM3245024 ,
GSM3245025 ,
GSM3245026 ,
GSM3245027 ,
GSM3245028 ,
GSM3245029 ,
GSM3245030 ,
GSM3245031 ,
GSM3245032 ,
GSM3245033 ,
GSM3245034 ,
GSM3245035 ,
GSM3245036 ,
GSM3245037 ,
GSM3245038 ,
GSM3245039 ,
GSM3245040 ,
GSM3245041 ,
GSM3245042 ,
GSM3245043 ,
GSM3245044 ,
GSM3245045 ,
GSM3245046 ,
GSM3245047 ,
GSM3245048 ,
GSM3245049 ,
GSM3245050 ,
GSM3245051 ,
GSM3245052 ,
GSM3245053 ,
GSM3245054 ,
GSM3245055 ,
GSM3245056 ,
GSM3245057 ,
GSM3245058 ,
GSM3245059 ,
GSM3245060 ,
GSM3245061 ,
GSM3245062 ,
GSM3245063 ,
GSM3245064 ,
GSM3245065 ,
GSM3245066 ,
GSM3245067 ,
GSM3245068 ,
GSM3245069 ,
GSM3245070 ,
GSM3245071 ,
GSM3245072 ,
GSM3245073 ,
GSM3245074 ,
GSM3245075 ,
GSM3245076 ,
GSM3245077 ,
GSM3245078 ,
GSM3245079 ,
GSM3245080 ,
GSM3245081 ,
GSM3245082 ,
GSM3245083 ,
GSM3560431 ,
GSM3560432 ,
GSM3560433 ,
GSM3560434 ,
GSM3560435 ,
GSM3560436 ,
GSM3560437 ,
GSM3560438 ,
GSM3560439 ,
GSM3560440 ,
GSM3560441 ,
GSM3560442 ,
GSM3560443 ,
GSM3560444 ,
GSM3560445 ,
GSM3560462 ,
GSM3560463 ,
GSM3560464 ,
GSM3560465 ,
GSM3560466 ,
GSM3560467 ,
GSM3560468 ,
GSM3560469 ,
GSM3560470 ,
GSM3560471 ,
GSM3560472 ,
GSM3560473 ,
GSM3560474 ,
GSM3560475 ,
GSM3560476 ,
GSM3560477 ,
GSM3560478 ,
GSM3560479 ,
GSM3560480 ,
GSM3560481 ,
GSM3560482 ,
GSM3560487 ,
GSM3560488 ,
GSM3560489 ,
GSM3560490 ,
GSM3560491 ,
GSM3560492 ,
GSM4712747 ,
GSM4712748 ,
GSM4712749 ,
GSM4712750 ,
GSM4712751 ,
GSM4712752 ,
GSM4712753 ,
GSM4712754 ,
GSM4712755 Series (28)
GSE19346 Expression data from wildtype Sinorhizobium meliloti Rm1021 and an hfq mutant
GSE28171 Expression data of Medicago truncatula Jemalong A17 roots treated with S. meliloti exoA mutant or auxin transport inhibitors
GSE28172 Expression data of Medicago truncatula skl1-1 roots treated with S. meliloti wild-type or auxin transport inhibitors
GSE28173 Genes differentially expressed in wild-type Medicago truncatula plants during nodulation
GSE28174 Expression data from Medicago truncatula roots treated with S. meliloti wild-type or exoA mutant bacteria, or auxin transport inhibitors
GSE31325 The Conserved Polarity Factor PodJ1 Impacts Multiple Cell Envelope-Associated Functions in Sinorhizobium meliloti
GSE36186 Dual RpoH sigma factors in Sinorhizobium meliloti
GSE40391 Identification of RpoE2 target genes in Sinorhizobium meliloti
GSE43570 Expression data from wild type Sinorhizobium meliloti and mutants in the NSR grown under conditions of high and low nitrogen availability
GSE53705 Gene expression analysis in developmentally arrested root nodules formed by Sinorhizobium meliloti and Medicago truncatula
GSE61521 The Sinorhizobium meliloti SyrM regulon: effects on global gene expression are mediated by syrA and nodD3 (ChvI-SyrA)
GSE61524 The Sinorhizobium meliloti SyrM regulon: effects on global gene expression are mediated by syrA and nodD3 (SyrA)
GSE61525 The Sinorhizobium meliloti SyrM regulon: effects on global gene expression are mediated by syrA and nodD3 (SyrM)
GSE61526 The Sinorhizobium meliloti SyrM regulon: effects on global gene expression are mediated by syrA and nodD3
GSE100707 Novel genes and regulators for cell surface of Sinorhizobium meliloti.
GSE112818 Genome-wide identification of genes directly regulated by ChvI and a consensus sequence for ChvI binding in Sinorhizobium meliloti
GSE112819 Identification of direct transcriptional target genes of ExoS/ChvI two-component signaling in Sinorhizobium meliloti
GSE116664 Sinorhizobium meliloti root nodule bacterial transcriptomes for wild type and four mutant strains.
GSE116665 Overexpression of Sinorhizobium meliloti ECF sigma factors.
GSE116680 Most Sinorhizobium meliloti ECF-sigma factors perform accessory functions
GSE124977 Sinorhizobium meliloti as a model system to study Ca. Liberibacter asiaticus regulators. [CtrA]
GSE124978 Sinorhizobium meliloti as a model system to study Ca. Liberibacter asiaticus regulators. [LdtR]
GSE124980 Sinorhizobium meliloti as a model system to study Ca. Liberibacter asiaticus regulators. [LsrB]
GSE124981 Sinorhizobium meliloti as a model system to study Ca. Liberibacter asiaticus regulators. [phrR]
GSE124982 Sinorhizobium meliloti as a model system to study Ca. Liberibacter asiaticus regulators. [RpoH]
GSE124983 Sinorhizobium meliloti as a model system to study Ca. Liberibacter asiaticus regulators. [VisNR]
GSE124984 Sinorhizobium meliloti as a model system to study Ca. Liberibacter asiaticus regulators.
GSE155833 Identifying the regulon of the Sinorhizobium meliloti JspA protease
Data table header descriptions ID Name ORF Description Organism SPOT_ID
Data table ID Name ORF Description Organism SPOT_ID i14523056f1_x_at
iSMa0002f1
intergenic spacer
Sinorhizobium meliloti
iSMa0002f1
ci14523056f1_x_at
iSMa0002f1_RC
intergenic spacer
Sinorhizobium meliloti
iSMa0002f1_RC
i14523056f2_x_at
iSMa0002f2
intergenic spacer
Sinorhizobium meliloti
iSMa0002f2
ci14523056f2_x_at
iSMa0002f2_RC
intergenic spacer
Sinorhizobium meliloti
iSMa0002f2_RC
i14523056f3_x_at
iSMa0002f3
intergenic spacer
Sinorhizobium meliloti
iSMa0002f3
ci14523056f3_x_at
iSMa0002f3_RC
intergenic spacer
Sinorhizobium meliloti
iSMa0002f3_RC
i14523056f4_x_at
iSMa0002f4
intergenic spacer
Sinorhizobium meliloti
iSMa0002f4
ci14523056f4_x_at
iSMa0002f4_RC
intergenic spacer
Sinorhizobium meliloti
iSMa0002f4_RC
i14524469f1_x_at
iSMa2395f1
intergenic spacer
Sinorhizobium meliloti
iSMa2395f1
ci14524469f1_x_at
iSMa2395f1_RC
intergenic spacer
Sinorhizobium meliloti
iSMa2395f1_RC
i14524469f2_x_at
iSMa2395f2
intergenic spacer
Sinorhizobium meliloti
iSMa2395f2
ci14524469f2_x_at
iSMa2395f2_RC
intergenic spacer
Sinorhizobium meliloti
iSMa2395f2_RC
i15141458f1_x_at
iSMb21651f1
intergenic spacer
Sinorhizobium meliloti
iSMb21651f1
ci15141458f1_x_at
iSMb21651f1_RC
intergenic spacer
Sinorhizobium meliloti
iSMb21651f1_RC
i15141458f2_x_at
iSMb21651f2
intergenic spacer
Sinorhizobium meliloti
iSMb21651f2
ci15141458f2_x_at
iSMb21651f2_RC
intergenic spacer
Sinorhizobium meliloti
iSMb21651f2_RC
i15963754f1_x_at
iSMc02793f1
intergenic spacer
Sinorhizobium meliloti
iSMc02793f1
ci15963754f1_x_at
iSMc02793f1_RC
intergenic spacer
Sinorhizobium meliloti
iSMc02793f1_RC
i15963754f2_x_at
iSMc02793f2
intergenic spacer
Sinorhizobium meliloti
iSMc02793f2
ci15963754f2_x_at
iSMc02793f2_RC
intergenic spacer
Sinorhizobium meliloti
iSMc02793f2_RC
22973 1996 Kbytes .Supplementary file Size Download File type/resource GPL9757_stSmel_Mtra.CDF.gz
6.8 Mb
(ftp) (http) CDF
GPL9757_stSmel_Mtra_probeSequences_021715.txt.gz
4.3 Mb
(ftp) (http) TXT
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