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Status
Public on Jul 09, 2004
Title
[Barley1] Affymetrix Barley Genome Array
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Hordeum vulgare
Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip Barley Genome Array was designed and funded by the USDA-IFAFS Triticeae Improvement group (R. Wise, T. Close, G. Muehlbauer, R. Wing, and A. Kleinhofs) in collaboration with Affymetrix and the international barley community. A community effort resulted in a significant improvement to sequence quality through better clustering and derived annotations. Sequences used for the Barley Genome Array design were collected from consortia labs submitting EST sequences and by collecting sequences from the NCBI/GenBank non-redundant database. Approximately 400,000 raw barley ESTs were submitted from 84 libraries, and about 350,000 survived quality pruning. Stringent CAP3 clustering (-p95 -d60 -f100 -h50) was performed and resulted in 53,030 "unigenes" (26,634 contigs and 26,396 singletons). 25,500 contigs and singletons had complete 3' ends suitable for array design (see HarvEST Triticeae v0.95 and higher). This included all 1,145 known barley genes (including alleles) from the NCBI non-redundant database. The nonredundant cloned gene set was integrated with the EST clusters to aid in scaffolding the ESTs and also to retrieve any rare interesting genes (e.g., Mla, Rar1, Sgt1, Rpg1) for inclusion on the GeneChip microarray. After pruning against an enhanced Triticeae repeat element database (TREP), the exemplar set of 25,500 contigs and singletons was submitted to Affymetrix for initial computation. Potential applications for the barley array include analysis of malting properties, pest and disease control, abiotic stress tolerance, nutritional characteristics, and reproductive development. The GeneChip Barley Genome Array was released in June, 2003. Annotations derived from Affymetrix CSV file dated 6/23/2004
Web link
http://www.affymetrix.com/support/technical/byproduct.affx?product=barley1 http://www.affymetrix.com/analysis/index.affx
Submission date
Jul 09, 2004
Last update date
Nov 21, 2011
Organization
Affymetrix, Inc.
E-mail(s)
[email protected] , [email protected]
Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx
Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (1802)
GSM39090 , GSM39091 , GSM39092 , GSM39093 , GSM39094 , GSM39095
GSM68889 ,
GSM68890 ,
GSM68891 ,
GSM68892 ,
GSM68893 ,
GSM68894 ,
GSM68895 ,
GSM68896 ,
GSM68897 ,
GSM68898 ,
GSM68899 ,
GSM68900 ,
GSM68901 ,
GSM68902 ,
GSM68903 ,
GSM68904 ,
GSM68905 ,
GSM68906 ,
GSM71139 ,
GSM71140 ,
GSM71141 ,
GSM71142 ,
GSM71143 ,
GSM71144 ,
GSM71145 ,
GSM71146 ,
GSM71147 ,
GSM71148 ,
GSM71149 ,
GSM71150 ,
GSM71151 ,
GSM71152 ,
GSM71153 ,
GSM71154 ,
GSM71155 ,
GSM71156 ,
GSM71157 ,
GSM71158 ,
GSM71159 ,
GSM130799 ,
GSM130800 ,
GSM130801 ,
GSM130802 ,
GSM130803 ,
GSM130804 ,
GSM130805 ,
GSM130806 ,
GSM146357 ,
GSM146358 ,
GSM146359 ,
GSM146360 ,
GSM146361 ,
GSM146362 ,
GSM146363 ,
GSM146364 ,
GSM146365 ,
GSM146366 ,
GSM146367 ,
GSM146368 ,
GSM146369 ,
GSM146370 ,
GSM146371 ,
GSM146372 ,
GSM146373 ,
GSM146374 ,
GSM146375 ,
GSM146376 ,
GSM146377 ,
GSM146378 ,
GSM146379 ,
GSM146380 ,
GSM160464 ,
GSM160744 ,
GSM160815 ,
GSM160816 ,
GSM160817 ,
GSM160818 ,
GSM160819 ,
GSM160821 ,
GSM160822 ,
GSM160823 ,
GSM160824 ,
GSM160826 ,
GSM160831 ,
GSM161147 ,
GSM161148 ,
GSM161196 ,
GSM161198 ,
GSM161199 ,
GSM161200 ,
GSM161220 ,
GSM161221 ,
GSM161222 ,
GSM161224 ,
GSM161225 ,
GSM161227 ,
GSM161228 ,
GSM161229 ,
GSM213436 ,
GSM213441 ,
GSM213443 ,
GSM215727 ,
GSM215728 ,
GSM215729 ,
GSM215730 ,
GSM215731 ,
GSM215732 ,
GSM238408 ,
GSM238409 ,
GSM238410 ,
GSM238411 ,
GSM238412 ,
GSM238413 ,
GSM238414 ,
GSM238415 ,
GSM238416 ,
GSM238417 ,
GSM238418 ,
GSM238419 ,
GSM238420 ,
GSM238421 ,
GSM238422 ,
GSM238423 ,
GSM238424 ,
GSM238425 ,
GSM238426 ,
GSM238427 ,
GSM238428 ,
GSM238429 ,
GSM238430 ,
GSM238431 ,
GSM238432 ,
GSM238433 ,
GSM238434 ,
GSM238435 ,
GSM238436 ,
GSM238437 ,
GSM238438 ,
GSM238439 ,
GSM261021 ,
GSM261022 ,
GSM261023 ,
GSM261024 ,
GSM261025 ,
GSM261026 ,
GSM261027 ,
GSM261028 ,
GSM261029 ,
GSM261030 ,
GSM261031 ,
GSM261032 ,
GSM261033 ,
GSM261034 ,
GSM261035 ,
GSM261036 ,
GSM261037 ,
GSM261038 ,
GSM261039 ,
GSM261040 ,
GSM261041 ,
GSM261042 ,
GSM261043 ,
GSM261044 ,
GSM261045 ,
GSM261046 ,
GSM261047 ,
GSM261050 ,
GSM261051 ,
GSM261052 ,
GSM261053 ,
GSM261054 ,
GSM261055 ,
GSM261056 ,
GSM261057 ,
GSM261058 ,
GSM261059 ,
GSM261060 ,
GSM261061 ,
GSM261062 ,
GSM261063 ,
GSM261064 ,
GSM261065 ,
GSM261066 ,
GSM261067 ,
GSM261068 ,
GSM261069 ,
GSM261070 ,
GSM261071 ,
GSM261072 ,
GSM261073 ,
GSM261074 ,
GSM261075 ,
GSM261076 ,
GSM261077 ,
GSM261078 ,
GSM261079 ,
GSM281745 ,
GSM281746 ,
GSM281747 ,
GSM281748 ,
GSM281749 ,
GSM281750 ,
GSM282020 ,
GSM282021 ,
GSM282022 ,
GSM282023 ,
GSM282024 ,
GSM282025 ,
GSM282026 ,
GSM282027 ,
GSM282028 ,
GSM282029 ,
GSM282030 ,
GSM282031 ,
GSM282032 ,
GSM282033 ,
GSM282034 ,
GSM282035 ,
GSM282036 ,
GSM282037 ,
GSM282038 ,
GSM282039 ,
GSM282040 ,
GSM282041 ,
GSM310455 ,
GSM310863 ,
GSM310864 ,
GSM310865 ,
GSM310866 ,
GSM310867 ,
GSM311204 ,
GSM311205 ,
GSM311245 ,
GSM311249 ,
GSM311251 ,
GSM311252 ,
GSM311253 ,
GSM311254 ,
GSM311255 ,
GSM311256 ,
GSM311257 ,
GSM311258 ,
GSM311259 ,
GSM311260 ,
GSM311261 ,
GSM311262 ,
GSM311263 ,
GSM311265 ,
GSM363460 ,
GSM363461 ,
GSM363462 ,
GSM363463 ,
GSM363464 ,
GSM363465 ,
GSM363466 ,
GSM363467 ,
GSM363468 ,
GSM372938 ,
GSM372939 ,
GSM372940 ,
GSM372941 ,
GSM372942 ,
GSM372943 ,
GSM372944 ,
GSM372945 ,
GSM372946 ,
GSM372947 ,
GSM372948 ,
GSM372949 ,
GSM372950 ,
GSM372951 ,
GSM372952 ,
GSM372953 ,
GSM372954 ,
GSM372955 ,
GSM372956 ,
GSM372957 ,
GSM372958 ,
GSM372959 ,
GSM372960 ,
GSM372961 ,
GSM372962 ,
GSM372963 ,
GSM372964 ,
GSM372965 ,
GSM372966 ,
GSM372967 ,
GSM372968 ,
GSM372969 ,
GSM372970 ,
GSM372971 ,
GSM372972 ,
GSM372973 ,
GSM372974 ,
GSM372975 ,
GSM372976 ,
GSM372977 ,
GSM372978 ,
GSM372979 ,
GSM372980 ,
GSM372981 ,
GSM372982 ,
GSM372983 ,
GSM372984 ,
GSM372985 ,
GSM372986 ,
GSM372987 ,
GSM372988 ,
GSM372989 ,
GSM372990 ,
GSM372991 ,
GSM372992 ,
GSM372993 ,
GSM372994 ,
GSM372995 ,
GSM372996 ,
GSM372997 ,
GSM372998 ,
GSM372999 ,
GSM373000 ,
GSM373001 ,
GSM373002 ,
GSM373003 ,
GSM373004 ,
GSM373005 ,
GSM373006 ,
GSM373007 ,
GSM373008 ,
GSM373009 ,
GSM382232 ,
GSM382233 ,
GSM382234 ,
GSM382235 ,
GSM382236 ,
GSM382237 ,
GSM398249 ,
GSM398250 ,
GSM398251 ,
GSM398252 ,
GSM398253 ,
GSM398254 ,
GSM398255 ,
GSM398256 ,
GSM398257 ,
GSM398258 ,
GSM398259 ,
GSM398260 ,
GSM398261 ,
GSM398262 ,
GSM398263 ,
GSM398264 ,
GSM398265 ,
GSM398266 ,
GSM398267 ,
GSM398268 ,
GSM398269 ,
GSM398270 ,
GSM398271 ,
GSM398272 ,
GSM398273 ,
GSM398274 ,
GSM398275 ,
GSM398276 ,
GSM398277 ,
GSM398278 ,
GSM398279 ,
GSM398280 ,
GSM398281 ,
GSM398282 ,
GSM398283 ,
GSM419972 ,
GSM419973 ,
GSM419974 ,
GSM419975 ,
GSM419976 ,
GSM419977 ,
GSM419978 ,
GSM419979 ,
GSM419980 ,
GSM419981 ,
GSM419982 ,
GSM419983 ,
GSM431546 ,
GSM431547 ,
GSM431548 ,
GSM431549 ,
GSM431550 ,
GSM431551 ,
GSM431568 ,
GSM431569 ,
GSM431570 ,
GSM431571 ,
GSM431572 ,
GSM431573 ,
GSM440957 ,
GSM440958 ,
GSM440959 ,
GSM440960 ,
GSM440961 ,
GSM440962 ,
GSM440963 ,
GSM440964 ,
GSM440965 ,
GSM440966 ,
GSM440967 ,
GSM440968 ,
GSM440969 ,
GSM440970 ,
GSM440971 ,
GSM440972 ,
GSM440973 ,
GSM440974 ,
GSM440975 ,
GSM440976 ,
GSM440977 ,
GSM440978 ,
GSM440979 ,
GSM440980 ,
GSM465690 ,
GSM465691 ,
GSM465692 ,
GSM465693 ,
GSM465694 ,
GSM465695 ,
GSM465696 ,
GSM465697 ,
GSM465698 ,
GSM465699 ,
GSM465700 ,
GSM465701 ,
GSM465702 ,
GSM465703 ,
GSM465704 ,
GSM501010 ,
GSM501011 ,
GSM501012 ,
GSM501013 ,
GSM501014 ,
GSM501015 ,
GSM501016 ,
GSM501017 ,
GSM501018 ,
GSM501019 ,
GSM501020 ,
GSM501021 ,
GSM508448 ,
GSM508449 ,
GSM508450 ,
GSM508451 ,
GSM508452 ,
GSM508453 ,
GSM508454 ,
GSM508455 ,
GSM508456 ,
GSM508457 ,
GSM508458 ,
GSM508459 ,
GSM508460 ,
GSM508461 ,
GSM508462 ,
GSM508463 ,
GSM508464 ,
GSM508465 ,
GSM508466 ,
GSM508467 ,
GSM508468 ,
GSM508469 ,
GSM508470 ,
GSM508471 ,
GSM511707 ,
GSM511708 ,
GSM511709 ,
GSM511710 ,
GSM511711 ,
GSM511712 ,
GSM511713 ,
GSM511714 ,
GSM511715 ,
GSM511716 ,
GSM511717 ,
GSM511718 ,
GSM511719 ,
GSM511720 ,
GSM511721 ,
GSM511722 ,
GSM511723 ,
GSM511724 ,
GSM511725 ,
GSM511726 ,
GSM511727 ,
GSM511728 ,
GSM511729 ,
GSM511730 ,
GSM511731 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (65)
GSE2166
Wheat Freeze-Tolerance
GSE3097
Barley1 salinity stress study
GSE3170
Barley single feature polymorphisms and drought stress gene expression
GSE5605
Expression data from barley under salinity stress and JA treatment
GSE6325
Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
GSE6990
Barley drought stress
GSE6993
Barley low temperature stress
GSE8618
P. aeruginosa virulent factor to barley
GSE8712
The effects of Yariv-reagent on barley aleurone GA signaling
GSE9365
Expression data from barley maturing and germinating grains
GSE10328
ABA experiment
GSE10329
Low temperature stress in cv. Dicktoo
GSE10330
Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
GSE10332
Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
GSE11182
Steptoe x Morex seedling leaf comparison
GSE11200
Expression data from malting barley seeds
GSE12584
Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
GSE14521
Late response to boron toxicity in barley leaves
GSE14930
Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
GSE15295
Mercury toxicity in barley roots
GSE15970
Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
GSE16754
Comparative transcriptional profiling of organs of the barley spike
GSE17238
Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
GSE17240
Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
GSE17669
Gene expression in the barley spike during drought stress
GSE18758
Microarray data from barley aleurone
GSE20034
Diurnal expression data from developing barley caryopses
GSE20279
Blumeria graminis fsp hordei effects on translation initiation in compatible and incompatible barley
GSE20416
Genetic regulation of gene expression of barley in response to stem rust (Pgt isolate TTKS)
GSE21804
Over-expression of ODDSOC2 in Golden Promise
GSE23595
Barley Germination and Seedling Growth Time Course
GSE23775
Transcriptome analysis of the barley fast neutron mutants nec3
GSE23896
Heat stress expression data from developing barley caryopses
GSE24534
Transcriptome analysis of a breeding program pedigree
GSE27821
Short and long term cold responses in a winter barley
GSE27822
Long term cold responses in a winter barley
GSE33391
Cross-species Detection in Barley1 GeneChip Array
GSE33392
Transcription profiling of barley plants containing variants of Mla1 and Mla6 powdery mildew resistance genes
GSE33393
Genotype-dependent gene expression in barley
GSE33394
Genetics of gene expression in barley
GSE33395
Developing seeds of M955 low phytic acid barley 7 days after anthesis
GSE33396
Mla-specified Transcriptional Responses in Barley-Powdery Mildew Interactions
GSE33397
A Ca2+/calmodulin-dependent protein kinase required for symbiotic nodule development: Gene identification by transcript-based cloning
GSE33398
Transcriptome analysis of trichothecene-induced gene expression in barley
GSE33399
Necrotic mutants in barley cv. Steptoe
GSE33400
Mapping barley genes to chromosome arms by transcript profiling of wheat-barley ditelosomic chromosome addition lines
GSE33401
Transcriptome analysis of wild barley (H. vulgare ssp spontaneum) after pathogen inoculation
GSE33405
Barley host response to the direct application of the trichothecene mycotoxin deoxynivalenol
GSE33406
mlo5-mediated resistance responses in barley
GSE33407
Barley cv Morex inoculated with Fusarium graminearum and water as mock control
GSE33413
Functional Genomic Analysis Of Barley(Hordeum vulgare L.) Grain Protein Accumulation
GSE33415
Microarray of barley genes in wheat-barley chromosome addition lines
GSE33842
Structural and functional characterization of a winter malting barley
GSE34102
Expression analysis of gene silenced barley to identify the function of a novel LRR-RLK (leucine-rich repeat receptor-like kinase)
GSE43704
Comparison of isogenic lines differing in vernalization requirement
GSE43906
Transcript profiling of local and adjacent leaf responses in barley following inoculation with Pseudomonas syringae
GSE48845
Barley gene expression during compatible and incompatible infection with the smut fungus Ustilago hordei
GSE56437
Transcriptome characterization of genotype-dependent effects of CaCl2 treatment on drought adaptation in barley (Hordeum vulgare L.).
GSE56585
Identification of regulatory targets of the cereal VERNALIZATION1 transcription factor
GSE61644
Transcript profiling of Bln1 silenced plants (BSMV-VIGS) relative to empty vector and buffer treated controls in barley-powdery mildew interactions
GSE64228
Expression data of leaves from transgenic barley expressing wheat Lr34 gene
GSE67367
Expression data from root segments of barley (Hordeum vulgare) during a transient water deficit repressing lateral root formation
GSE68963
Genetic regulation of barley gene expression in response to the powdery mildew fungus, Blumeria graminis f. sp. hordei (Bgh)
GSE73817
Expression data from leaves of Hordeum vulgare at seedling stage
GSE112428
Transcriptomic study of couch grass rhizomes exposed to dehydration
Data table header descriptions
ID
Affymetrix Probe Set ID
GB_ACC
GenBank Accession Number
CLONE_ID
link in Entrez Nucleotides database
SPOT_ID
Column added by GEO staff to facilitate sequence tracking in Entrez GEO
Species Scientific Name
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Representative Public ID
The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Sequence Source
Target Description
GenBank description associated with the representative public identifier. Blank for some probe sets.
Gene Title
Gene Symbol
ENTREZ_GENE_ID
Entrez Gene Database UID
Gene Ontology Biological Process
Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component
Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function
Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Data table
ID
GB_ACC
CLONE_ID
SPOT_ID
Species Scientific Name
Annotation Date
Sequence Type
Representative Public ID
Sequence Source
Target Description
Gene Title
Gene Symbol
ENTREZ_GENE_ID
Gene Ontology Biological Process
Gene Ontology Cellular Component
Gene Ontology Molecular Function
1200459_Reg_88-1740_at
1200459_Reg_88-1740
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
1200459_Reg_88-1740
Affymetrix Proprietary Database
From cloning vector pGL3-Basic, firefly luciferase (luc) gene
1289374_Reg_826-1545_at
1289374_Reg_826-1545
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
1289374_Reg_826-1545
Affymetrix Proprietary Database
Cloning vector phGFP-S65T, complete sequence, green fluorescent protein (gfp) gene, complete cds
149174_Reg_66-1115_at
149174_Reg_66-1115
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
149174_Reg_66-1115
Affymetrix Proprietary Database
K. pneumoniae bromoxynil-specific nitrilase (bxn) gene, complete cds
150775_Reg_211-1236_at
150775_Reg_211-1236
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
150775_Reg_211-1236
Affymetrix Proprietary Database
Plasmid pJR225 (from E.coli) hygromycin B phosphotransferase (hgh) gene, complete cds
23381122_R_1101-1898_at
23381122_R_1101-1898
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
23381122_R_1101-1898
Affymetrix Proprietary Database
From binary vector pGV4042, region between right and left T-DNA border and neomycin phosphotransferase (nptII) gene
2623978_R_1403-2212_at
2623978_R_1403-2212
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
2623978_R_1403-2212
Affymetrix Proprietary Database
Synthetic DNA containing kanamycin and geneticin (G418) resistance gene in Escherichia coli plasmid pFA6a-GFPS65T-kanMX6
40321-46140.AF427791_x_at
--Control
Hordeum vulgare
Mar 11, 2009
Control sequence
40321-46140.AF427791
Affymetrix Proprietary Database
Intergenic region between Morex BAC predicted Stowaway.3 and BARE-1 SoloLTR-1.2; intergenic region, flanking CDS (711N16.9 and 711N16.8) are methylated in 7-day old leaves, but are expressed via rtPCR assay.
48446_Reg_1231-2205_at
48446_Reg_1231-2205
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
48446_Reg_1231-2205
Affymetrix Proprietary Database
V.harveyi luxA and luxB genes for luciferase alpha and beta subunits, luxB gene
48446_Reg_137-1204_at
48446_Reg_137-1204
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
48446_Reg_137-1204
Affymetrix Proprietary Database
From V. harveyi luxA and luxB genes for luciferase alpha and beta subunits, luxA gene
74797-75570.AF427791_x_at
--Control
Hordeum vulgare
Mar 11, 2009
Control sequence
74797-75570.AF427791
Affymetrix Proprietary Database
Intergenic region between Morex BAC predicted CDS 80H14.15 and 80H14.14; both 80H14.15 and 80H14.14 CDS are not expressed in 7-day old leaves via rtPCR assay
8829-9073.AF427791_x_at
--Control
Hordeum vulgare
Mar 11, 2009
Control sequence
8829-9073.AF427791
Affymetrix Proprietary Database
Intergenic region between Morex BAC predicted tRNA ser and CDS 711N16.14; 711N16.14 CDS is not expressed in 7-day old leaves via rtPCR assay.
9507414_R_4264-4644_at
9507414_R_4264-4644
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
9507414_R_4264-4644
Affymetrix Proprietary Database
From complete sequence of plasmid pRL1063a, bleomycin resistance gene
A00196.1_at
A00196.1
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
A00196.1
Affymetrix Proprietary Database
A00196 Synthetic uidA gene for beta-glucuronidase (GUS)
A06498.1_s_at
A06498.1
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
A06498.1
Affymetrix Proprietary Database
Artificial sequence for nopaline synthase
AB011264_at
AB011264
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
AB011264
Affymetrix Proprietary Database
BEST BLASTX NR: 11/06/02 BAA74581.1 0.0 (AB011264) nicochianamine synthase 3 [Hordeum vulgare subsp. vulgare]
0030418 // nicotianamine biosynthetic process // inferred from electronic annotation
0016740 // transferase activity // inferred from electronic annotation /// 0030410 // nicotianamine synthase activity // inferred from electronic annotation
AB011266_at
AB011266
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
AB011266
Affymetrix Proprietary Database
BEST BLASTX NR: 11/06/02 BAA74583.1 0.0 (AB011266) nicotianamine Synthase 4 [Hordeum vulgare subsp. vulgare]
0030418 // nicotianamine biosynthetic process // inferred from electronic annotation
0016740 // transferase activity // inferred from electronic annotation /// 0030410 // nicotianamine synthase activity // inferred from electronic annotation
AB019525_at
AB019525
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
AB019525
Affymetrix Proprietary Database
BEST BLASTX NR: 11/06/02 BAA74587.1 0.0 (AB019525) nicotianamine synthase 7 [Hordeum vulgare subsp. vulgare]
0030418 // nicotianamine biosynthetic process // inferred from electronic annotation
0016740 // transferase activity // inferred from electronic annotation /// 0030410 // nicotianamine synthase activity // inferred from electronic annotation
AB024007_at
AB024007
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
AB024007
Affymetrix Proprietary Database
BEST BLASTX NR: 11/06/02 BAB07798.1 e-104 (AB024007) IDS3 [Hordeum vulgare subsp. vulgare]
0016491 // oxidoreductase activity // inferred from electronic annotation
AF016328_at
AF016328
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
AF016328
Affymetrix Proprietary Database
BEST BLASTX NR: 11/06/02 AAB02259.1 2e-67 permatin precursor
AF026538_at
AF026538
Hordeum vulgare
Mar 11, 2009
Exemplar sequence
AF026538
Affymetrix Proprietary Database
BEST BLASTX NR: 11/06/02 A59232 e-161 ABA-responsive protein - barley gb|AAD09343.1| (AF026538) ABA-responsive protein [Hordeum vulgare]
ABA-responsive protein
LOC548112
548112
Total number of rows: 22840 Table truncated, full table size 5423 Kbytes .
Supplementary data files not provided