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GEO accession:
Sample GSM146367
Query DataSets for GSM146367
Status
Public on Mar 31, 2007
Title
Maythorpe Root Salt, biological rep 2
Sample type
RNA
Source name
Maythorpe Root
Organism
Hordeum vulgare
Characteristics
Genotype: Maythorpe
Treatment protocol
salt root
Growth protocol
hydroponics
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol
GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description
Gene expression data from barley root
Data processing
The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date
Nov 20, 2006
Last update date
Mar 31, 2007
Contact name
Harkamal Walia
Organization name
University of Nebraska
Street address
Agronomy and Horticulture
City
Lincoln
State/province
NE
ZIP/Postal code
68583
Country
USA
Platform ID
GPL1340
Series (1)
GSE6325
Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Data table header descriptions
ID_REF
VALUE
GCOS-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
99.3
P
0.020022
AFFX-BioB-M_at
75.9
P
0.003212
AFFX-BioB-3_at
102.2
P
0.000446
AFFX-BioC-5_at
274.5
P
0.000169
AFFX-BioC-3_at
390.5
P
0.00006
AFFX-BioDn-5_at
544.5
P
0.000052
AFFX-BioDn-3_at
1396.5
P
0.000147
AFFX-CreX-5_at
2590.3
P
0.000044
AFFX-CreX-3_at
6469.8
P
0.000044
AFFX-DapX-5_at
263
P
0.00007
AFFX-DapX-M_at
653.6
P
0.000258
AFFX-DapX-3_at
1608.9
P
0.000044
AFFX-LysX-5_at
48.6
P
0.000258
AFFX-LysX-M_at
129.7
P
0.036569
AFFX-LysX-3_at
149.7
P
0.000127
AFFX-PheX-5_at
96
P
0.000147
AFFX-PheX-M_at
94.9
P
0.000754
AFFX-PheX-3_at
168.7
P
0.000258
AFFX-ThrX-5_at
130.7
P
0.00141
AFFX-ThrX-M_at
218.4
P
0.00011
Total number of rows:
22840
Table truncated, full table size
702 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM146367.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
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