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GEO accession:
Sample GSM68894
Query DataSets for GSM68894
Status
Public on Nov 18, 2005
Title
3 h salt stressed replicate 3
Sample type
RNA
Source name
shoot tissue
Organism
Hordeum vulgare
Characteristics
cv. Morex
Extracted molecule
total RNA
Extraction protocol
Approximately 12 plants were used for RNA extraction
Label
biotin
Label protocol
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
salt stressed
Data processing
GCOS 1.2
Submission date
Aug 09, 2005
Last update date
Aug 09, 2005
Contact name
HARKAMAL WALIA
E-mail(s)
[email protected]
Phone
951-827-3808
Organization name
University of California
Street address
Department of Botany & Plant Sciecnes
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL1340
Series (1)
GSE3097
Barley1 salinity stress study
Data table header descriptions
ID_REF
VALUE
GCOS12-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
177.1
P
0.01667
AFFX-BioB-M_at
126.1
P
0.001593
AFFX-BioB-3_at
84.3
P
0.012547
AFFX-BioC-5_at
346.3
P
0.000509
AFFX-BioC-3_at
265.5
P
0.000754
AFFX-BioDn-5_at
252
P
0.000581
AFFX-BioDn-3_at
2040.8
P
0.000195
AFFX-CreX-5_at
2889.9
P
0.000044
AFFX-CreX-3_at
4863
P
0.000044
AFFX-DapX-5_at
17.6
A
0.313723
AFFX-DapX-M_at
25.3
A
0.227636
AFFX-DapX-3_at
15
A
0.783476
AFFX-LysX-5_at
8.9
A
0.559354
AFFX-LysX-M_at
24.2
A
0.631562
AFFX-LysX-3_at
20.8
A
0.216524
AFFX-PheX-5_at
7.9
A
0.58862
AFFX-PheX-M_at
7.4
A
0.686277
AFFX-PheX-3_at
7.7
A
0.897835
AFFX-ThrX-5_at
6.3
A
0.916408
AFFX-ThrX-M_at
13.7
A
0.368438
Total number of rows:
22840
Table truncated, full table size
704 Kbytes
.
Supplementary data files not provided
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