GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM146369
Query DataSets for GSM146369
Status
Public on Mar 31, 2007
Title
Golden Promise shoot Control, biological rep1
Sample type
RNA
Source name
Golden Promise shoot
Organism
Hordeum vulgare
Characteristics
Genotype: Golden Promise
Treatment protocol
control shoot
Growth protocol
hydroponics
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol
GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description
Gene expression data from barley shoot
Data processing
The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date
Nov 20, 2006
Last update date
Mar 31, 2007
Contact name
Harkamal Walia
Organization name
University of Nebraska
Street address
Agronomy and Horticulture
City
Lincoln
State/province
NE
ZIP/Postal code
68583
Country
USA
Platform ID
GPL1340
Series (1)
GSE6325
Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Data table header descriptions
ID_REF
VALUE
GCOS-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
114.5
P
0.003595
AFFX-BioB-M_at
81
P
0.00034
AFFX-BioB-3_at
86.7
P
0.000972
AFFX-BioC-5_at
252.9
P
0.000095
AFFX-BioC-3_at
341.8
P
0.000052
AFFX-BioDn-5_at
510.7
P
0.00007
AFFX-BioDn-3_at
1393.4
P
0.000169
AFFX-CreX-5_at
2261.9
P
0.000044
AFFX-CreX-3_at
4519.9
P
0.000044
AFFX-DapX-5_at
190
P
0.000147
AFFX-DapX-M_at
467.1
P
0.000446
AFFX-DapX-3_at
1031
P
0.000052
AFFX-LysX-5_at
50.2
P
0.000225
AFFX-LysX-M_at
77.7
P
0.042962
AFFX-LysX-3_at
175
P
0.000127
AFFX-PheX-5_at
84.7
P
0.000509
AFFX-PheX-M_at
73
P
0.006871
AFFX-PheX-3_at
136.9
P
0.000127
AFFX-ThrX-5_at
82.7
P
0.00141
AFFX-ThrX-M_at
126.5
P
0.000258
Total number of rows:
22840
Table truncated, full table size
702 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM146369.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
