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    TNXB tenascin XB [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716998, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TNXBprovided by VGNC
    Official Full Name
    tenascin XBprovided by VGNC
    Primary source
    VGNC:VGNC:99451
    See related
    Ensembl:ENSMMUG00000000758
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TNXB in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    46
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (137393165..137462440)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (32887145..32956141, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase like Neighboring gene activating transcription factor 6 beta Neighboring gene uncharacterized LOC106997900 Neighboring gene cytochrome P450 family 21 subfamily A member 2 Neighboring gene complement C4-B-like Neighboring gene uncharacterized LOC106995850

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of the novel localization of tenascinX in the monkey choroid plexus and comparison with the mouse. Imura K, et al. Eur J Histochem, 2009 Dec 29. PMID 22073359, Free PMC Article
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Identification of the novel localization of tenascinX in the monkey choroid plexus and comparison with the mouse
      Title: Identification of the novel localization of tenascinX in the monkey choroid plexus and comparison with the mouse.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tenascin-X

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      137393165..137462440
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028847702.1 → XP_028703535.1  tenascin-X isoform X8

      UniProtKB/TrEMBL
      F6RK27
      Conserved Domains (5) summary
      PTZ00214
      Location:254 → 669
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      cd00063
      Location:1406 → 1485
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:3845 → 4054
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam07974
      Location:216 → 244
      EGF_2; EGF-like domain
      pfam00041
      Location:3577 → 3655
      fn3; Fibronectin type III domain

    2. XM_028847696.1 → XP_028703529.1  tenascin-X isoform X1

      UniProtKB/TrEMBL
      F6RK27
      Related
      ENSMMUP00000001024.4, ENSMMUT00000001092.4
      Conserved Domains (5) summary
      PTZ00214
      Location:254 → 669
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      cd00063
      Location:1406 → 1485
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:4277 → 4486
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam07974
      Location:216 → 244
      EGF_2; EGF-like domain
      pfam00041
      Location:4009 → 4087
      fn3; Fibronectin type III domain

    3. XM_028847700.1 → XP_028703533.1  tenascin-X isoform X5

      UniProtKB/TrEMBL
      F6RK27
      Conserved Domains (5) summary
      PTZ00214
      Location:254 → 669
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      cd00063
      Location:1406 → 1485
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:4061 → 4270
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam07974
      Location:216 → 244
      EGF_2; EGF-like domain
      pfam00041
      Location:3793 → 3871
      fn3; Fibronectin type III domain

    4. XM_028847698.1 → XP_028703531.1  tenascin-X isoform X3

      UniProtKB/TrEMBL
      F6RK27
      Conserved Domains (5) summary
      PTZ00214
      Location:254 → 669
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      cd00063
      Location:1406 → 1485
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:4061 → 4270
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam07974
      Location:216 → 244
      EGF_2; EGF-like domain
      pfam00041
      Location:3793 → 3871
      fn3; Fibronectin type III domain

    5. XM_028847699.1 → XP_028703532.1  tenascin-X isoform X4

      UniProtKB/TrEMBL
      A0A1D5Q3Q9, F6RK27
      Related
      ENSMMUP00000042671.2, ENSMMUT00000076563.2
      Conserved Domains (5) summary
      PTZ00214
      Location:254 → 669
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      cd00063
      Location:1406 → 1485
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:4061 → 4270
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam07974
      Location:216 → 244
      EGF_2; EGF-like domain
      pfam00041
      Location:3793 → 3871
      fn3; Fibronectin type III domain

    6. XM_028847701.1 → XP_028703534.1  tenascin-X isoform X6

      UniProtKB/TrEMBL
      F6RK27
      Conserved Domains (5) summary
      PTZ00214
      Location:254 → 669
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      cd00063
      Location:1406 → 1485
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:4061 → 4270
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam07974
      Location:216 → 244
      EGF_2; EGF-like domain
      pfam00041
      Location:3793 → 3871
      fn3; Fibronectin type III domain

    7. XM_028847703.1 → XP_028703536.1  tenascin-X isoform X9

      UniProtKB/TrEMBL
      F6RK27
      Conserved Domains (5) summary
      PTZ00214
      Location:254 → 669
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      cd00063
      Location:1406 → 1485
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:3734 → 3943
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam07974
      Location:216 → 244
      EGF_2; EGF-like domain
      pfam00041
      Location:3466 → 3544
      fn3; Fibronectin type III domain

    8. XM_028847697.1 → XP_028703530.1  tenascin-X isoform X2

      UniProtKB/TrEMBL
      F6VVL9
      Related
      ENSMMUP00000019967.4, ENSMMUT00000021349.4
      Conserved Domains (5) summary
      PTZ00214
      Location:254 → 669
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      cd00063
      Location:1406 → 1485
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:4174 → 4383
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam07974
      Location:216 → 244
      EGF_2; EGF-like domain
      pfam00041
      Location:3906 → 3984
      fn3; Fibronectin type III domain

    9. XM_028847704.1 → XP_028703537.1  tenascin-X isoform X10

      Conserved Domains (5) summary
      PTZ00214
      Location:297 → 669
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      cd00063
      Location:1406 → 1485
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:3127 → 3336
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam07974
      Location:216 → 244
      EGF_2; EGF-like domain
      pfam00041
      Location:2859 → 2937
      fn3; Fibronectin type III domain

    10. XM_028847705.1 → XP_028703538.1  tenascin-X isoform X11

      Conserved Domains (5) summary
      PTZ00214
      Location:297 → 669
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      cd00063
      Location:1406 → 1485
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:2911 → 3120
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam07974
      Location:216 → 244
      EGF_2; EGF-like domain
      pfam00041
      Location:2643 → 2721
      fn3; Fibronectin type III domain

    11. XM_015136014.2 → XP_014991500.2  tenascin-X isoform X7

      UniProtKB/TrEMBL
      A0A1D5R8K4
      Related
      ENSMMUP00000056644.2, ENSMMUT00000062726.2
      Conserved Domains (6) summary
      PTZ00214
      Location:254 → 669
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      PRK14086
      Location:884 → 1212
      dnaA; chromosomal replication initiation protein; Provisional
      cd00063
      Location:1159 → 1238
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:4030 → 4239
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam07974
      Location:216 → 244
      EGF_2; EGF-like domain
      pfam00041
      Location:3762 → 3840
      fn3; Fibronectin type III domain

    12. XM_028847706.1 → XP_028703539.1  tenascin-X isoform X12

      Conserved Domains (3) summary
      cd00063
      Location:1038 → 1124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00147
      Location:1219 → 1428
      Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
      pfam00041
      Location:951 → 1029
      fn3; Fibronectin type III domain
    Nucleotide Protein
    Heading Accession and Version

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