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TNXB tenascin XB [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 716998, updated on 17-Aug-2024

Summary

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Official Symbol
TNXBprovided by VGNC
Official Full Name
tenascin XBprovided by VGNC
Primary source
VGNC:VGNC:99451
See related
Ensembl:ENSMMUG00000000758
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TNXB in Genome Data Viewer
Location:
chromosome: 4
Exon count:
46
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (137393165..137462440)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (32887145..32956141, complement)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase like Neighboring gene activating transcription factor 6 beta Neighboring gene uncharacterized LOC106997900 Neighboring gene cytochrome P450 family 21 subfamily A member 2 Neighboring gene complement C4-B-like Neighboring gene uncharacterized LOC106995850

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of the novel localization of tenascinX in the monkey choroid plexus and comparison with the mouse. Imura K, et al. Eur J Histochem, 2009 Dec 29. PMID 22073359, Free PMC Article
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Identification of the novel localization of tenascinX in the monkey choroid plexus and comparison with the mouse
    Title: Identification of the novel localization of tenascinX in the monkey choroid plexus and comparison with the mouse.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tenascin-X

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    137393165..137462440
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028847702.1 → XP_028703535.1  tenascin-X isoform X8

    UniProtKB/TrEMBL
    F6RK27
    Conserved Domains (5) summary
    PTZ00214
    Location:254 → 669
    PTZ00214; high cysteine membrane protein Group 4; Provisional
    cd00063
    Location:1406 → 1485
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:3845 → 4054
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam07974
    Location:216 → 244
    EGF_2; EGF-like domain
    pfam00041
    Location:3577 → 3655
    fn3; Fibronectin type III domain

  2. XM_028847696.1 → XP_028703529.1  tenascin-X isoform X1

    UniProtKB/TrEMBL
    F6RK27
    Related
    ENSMMUP00000001024.4, ENSMMUT00000001092.4
    Conserved Domains (5) summary
    PTZ00214
    Location:254 → 669
    PTZ00214; high cysteine membrane protein Group 4; Provisional
    cd00063
    Location:1406 → 1485
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:4277 → 4486
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam07974
    Location:216 → 244
    EGF_2; EGF-like domain
    pfam00041
    Location:4009 → 4087
    fn3; Fibronectin type III domain

  3. XM_028847700.1 → XP_028703533.1  tenascin-X isoform X5

    UniProtKB/TrEMBL
    F6RK27
    Conserved Domains (5) summary
    PTZ00214
    Location:254 → 669
    PTZ00214; high cysteine membrane protein Group 4; Provisional
    cd00063
    Location:1406 → 1485
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:4061 → 4270
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam07974
    Location:216 → 244
    EGF_2; EGF-like domain
    pfam00041
    Location:3793 → 3871
    fn3; Fibronectin type III domain

  4. XM_028847698.1 → XP_028703531.1  tenascin-X isoform X3

    UniProtKB/TrEMBL
    F6RK27
    Conserved Domains (5) summary
    PTZ00214
    Location:254 → 669
    PTZ00214; high cysteine membrane protein Group 4; Provisional
    cd00063
    Location:1406 → 1485
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:4061 → 4270
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam07974
    Location:216 → 244
    EGF_2; EGF-like domain
    pfam00041
    Location:3793 → 3871
    fn3; Fibronectin type III domain

  5. XM_028847699.1 → XP_028703532.1  tenascin-X isoform X4

    UniProtKB/TrEMBL
    A0A1D5Q3Q9, F6RK27
    Related
    ENSMMUP00000042671.2, ENSMMUT00000076563.2
    Conserved Domains (5) summary
    PTZ00214
    Location:254 → 669
    PTZ00214; high cysteine membrane protein Group 4; Provisional
    cd00063
    Location:1406 → 1485
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:4061 → 4270
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam07974
    Location:216 → 244
    EGF_2; EGF-like domain
    pfam00041
    Location:3793 → 3871
    fn3; Fibronectin type III domain

  6. XM_028847701.1 → XP_028703534.1  tenascin-X isoform X6

    UniProtKB/TrEMBL
    F6RK27
    Conserved Domains (5) summary
    PTZ00214
    Location:254 → 669
    PTZ00214; high cysteine membrane protein Group 4; Provisional
    cd00063
    Location:1406 → 1485
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:4061 → 4270
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam07974
    Location:216 → 244
    EGF_2; EGF-like domain
    pfam00041
    Location:3793 → 3871
    fn3; Fibronectin type III domain

  7. XM_028847703.1 → XP_028703536.1  tenascin-X isoform X9

    UniProtKB/TrEMBL
    F6RK27
    Conserved Domains (5) summary
    PTZ00214
    Location:254 → 669
    PTZ00214; high cysteine membrane protein Group 4; Provisional
    cd00063
    Location:1406 → 1485
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:3734 → 3943
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam07974
    Location:216 → 244
    EGF_2; EGF-like domain
    pfam00041
    Location:3466 → 3544
    fn3; Fibronectin type III domain

  8. XM_028847697.1 → XP_028703530.1  tenascin-X isoform X2

    UniProtKB/TrEMBL
    F6VVL9
    Related
    ENSMMUP00000019967.4, ENSMMUT00000021349.4
    Conserved Domains (5) summary
    PTZ00214
    Location:254 → 669
    PTZ00214; high cysteine membrane protein Group 4; Provisional
    cd00063
    Location:1406 → 1485
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:4174 → 4383
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam07974
    Location:216 → 244
    EGF_2; EGF-like domain
    pfam00041
    Location:3906 → 3984
    fn3; Fibronectin type III domain

  9. XM_028847704.1 → XP_028703537.1  tenascin-X isoform X10

    Conserved Domains (5) summary
    PTZ00214
    Location:297 → 669
    PTZ00214; high cysteine membrane protein Group 4; Provisional
    cd00063
    Location:1406 → 1485
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:3127 → 3336
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam07974
    Location:216 → 244
    EGF_2; EGF-like domain
    pfam00041
    Location:2859 → 2937
    fn3; Fibronectin type III domain

  10. XM_028847705.1 → XP_028703538.1  tenascin-X isoform X11

    Conserved Domains (5) summary
    PTZ00214
    Location:297 → 669
    PTZ00214; high cysteine membrane protein Group 4; Provisional
    cd00063
    Location:1406 → 1485
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:2911 → 3120
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam07974
    Location:216 → 244
    EGF_2; EGF-like domain
    pfam00041
    Location:2643 → 2721
    fn3; Fibronectin type III domain

  11. XM_015136014.2 → XP_014991500.2  tenascin-X isoform X7

    UniProtKB/TrEMBL
    A0A1D5R8K4
    Related
    ENSMMUP00000056644.2, ENSMMUT00000062726.2
    Conserved Domains (6) summary
    PTZ00214
    Location:254 → 669
    PTZ00214; high cysteine membrane protein Group 4; Provisional
    PRK14086
    Location:884 → 1212
    dnaA; chromosomal replication initiation protein; Provisional
    cd00063
    Location:1159 → 1238
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:4030 → 4239
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam07974
    Location:216 → 244
    EGF_2; EGF-like domain
    pfam00041
    Location:3762 → 3840
    fn3; Fibronectin type III domain

  12. XM_028847706.1 → XP_028703539.1  tenascin-X isoform X12

    Conserved Domains (3) summary
    cd00063
    Location:1038 → 1124
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00147
    Location:1219 → 1428
    Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
    pfam00041
    Location:951 → 1029
    fn3; Fibronectin type III domain
Nucleotide Protein
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