U.S. flag

An official website of the United States government

GT-1 Homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837905, updated on 18-Sep-2024

Summary

Official Symbol
GT-1
Official Full Name
Homeodomain-like superfamily protein
Primary source
TAIR:AT1G13450
Locus tag
AT1G13450
See related
Araport:AT1G13450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6J4.18; T6J4_18
Summary
Encodes GT-1, a plant transcription factor that binds to one of the cis-acting elements, BoxII, which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See GT-1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (4612731..4615353, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase C2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Protein phosphatase 2A regulatory B subunit family protein Neighboring gene hypothetical protein (DUF1262)

Interactions

General gene information

NM_001123807.2
NM_001332067.1
NM_001332068.1
NM_101215.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus PubMed 
located_in nucleus PubMed 
located_in nucleus  

General protein information

Preferred Names
Homeodomain-like superfamily protein
NP_001117279.1
  • Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G25990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001318993.1
  • Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G25990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_172802.2
  • Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G25990.1); Has 629 Blast hits to 540 proteins in 66 species: Archae - 0; Bacteria - 1; Metazoa - 110; Fungi - 7; Plants - 508; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4612731..4615353 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101215.4NP_172802.2  Homeodomain-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172802.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H720, Q2L6T7, Q39116, Q9FX53
    UniProtKB/TrEMBL
    A0A178WM96, A0A5S9U826
    Conserved Domains (1) summary
    cd12203
    Location:85150
    GT1; GT1, myb-like, SANT family
  2. NM_001123807.2NP_001117279.1  Homeodomain-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117279.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FX53
    Conserved Domains (1) summary
    cd12203
    Location:85150
    GT1; GT1, myb-like, SANT family
  3. NM_001332067.1NP_001318993.1  Homeodomain-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FX53
  4. NM_001332068.1NP_001322285.1  Homeodomain-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WL53, A0A1P8ATI8
External link. Please review our privacy policy.