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Cell differentiation, Rcd1-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831138, updated on 18-Sep-2024

Summary

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Official Full Name
Cell differentiation, Rcd1-like protein
Primary source
TAIR:AT5G12980
Locus tag
AT5G12980
See related
Araport:AT5G12980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T24H18.150; T24H18_150
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (4105383..4108232, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene proline-tRNA ligase (DUF1680) Neighboring gene proline-tRNA ligase (DUF1680) Neighboring gene Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein Neighboring gene CLAVATA3/ESR-RELATED 40 Neighboring gene glucan synthase-like 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Uncovering a novel function of the CCR4-NOT complex in phytochrome A-mediated light signalling in plants. Schwenk P, et al. Elife, 2021 Mar 30. PMID 33783355, Free PMC Article
  2. Identification of Arabidopsis CCR4-NOT Complexes with Pumilio RNA-Binding Proteins, APUM5 and APUM2. Arae T, et al. Plant Cell Physiol, 2019 Sep 1. PMID 31093672
  3. Telomerase Interaction Partners-Insight from Plants. Fulnečková J, et al. Int J Mol Sci, 2021 Dec 29. PMID 35008793, Free PMC Article
  4. Tandem affinity purification of AtTERT reveals putative interaction partners of plant telomerase in vivo. Majerská J, et al. Protoplasma, 2017 Jul. PMID 27853871
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_121301.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cell differentiation, Rcd1-like protein
NP_196802.1
  • Cell differentiation, Rcd1-like protein; CONTAINS InterPro DOMAIN/s: Cell differentiation, Rcd1-like (InterPro:IPR007216); BEST Arabidopsis thaliana protein match is: Cell differentiation, Rcd1-like protein (TAIR:AT3G20800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4105383..4108232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121301.5 → NP_196802.1  Cell differentiation, Rcd1-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196802.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UJH3, Q0WN13, Q9LXU1
    Conserved Domains (1) summary
    pfam04078
    Location:37 → 295
    Rcd1; Cell differentiation family, Rcd1-like
Nucleotide Protein
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