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Winged helix-turn-helix transcription repressor DNA-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844092, updated on 18-Sep-2024

Summary

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Official Full Name
Winged helix-turn-helix transcription repressor DNA-binding protein
Primary source
TAIR:AT1G77570
Locus tag
AT1G77570
See related
Araport:AT1G77570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtREN1; REN1; restricted to nucleolus 1; T5M16.16; T5M16_16
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (29143350..29144011)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene tubulin-tyrosine ligase Neighboring gene tRNA-Gln Neighboring gene filament-like protein (DUF869) Neighboring gene long chain acyl-CoA synthetase 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Reňák D, et al. Plant Cell Environ, 2014 Mar. PMID 23961845
  2. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
  3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_106405.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
is_active_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Winged helix-turn-helix transcription repressor DNA-binding protein
NP_177880.2
  • Winged helix-turn-helix transcription repressor DNA-binding; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G13980.1); Has 1245 Blast hits to 1235 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 256; Fungi - 110; Plants - 743; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29143350..29144011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106405.3 → NP_177880.2  Winged helix-turn-helix transcription repressor DNA-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177880.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WHB4, Q67XK8
    Conserved Domains (1) summary
    smart00415
    Location:26 → 116
    HSF; heat shock factor
Nucleotide Protein
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