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Sample GSM7871333 Query DataSets for GSM7871333
Status Public on Oct 30, 2024
Title Cortex Entorhinalis_J20_WT [204027420027_R04C02]
Sample type genomic
 
Source name Cortex Entorhinalis
Organism Mus musculus
Characteristics tissue: Cortex Entorhinalis
externalsampleid: J20_F23
Sex: F
dob: 11/24/2015
dod: 5/16/2016
agedays: 174
mousestrain: C57BL6
ad_model: J20
genotype: WT
Treatment protocol Mice were terminally anaesthetized with pentobarbital (intraperitoneal injection) and transcardially perfused with phosphate-buffered saline (PBS). The entorhinal cortex was dissected from the left brain hemisphere on wet ice and snap-frozen on dry ice for subsequent analysis
Growth protocol Animals were housed under standard conditions (constant temperature and humidity) with a 12h light/dark cycle in individually ventilated cages, with free access to food (Teklad irradiated global rodent diet (Envigo, United Kingdom)) and water.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA from all samples was isolated from the entorhinal cortex or hippocampus using the AllPrep DNA/RNA Mini Kit (Qiagen)
Label Cy3, Cy5
Label protocol DNA methylation was measured using the the Mammalian Methylation Array (HorvathMammalMethylChip4, GEO: GPL28271)
 
Hybridization protocol Not provided
Scan protocol Illumina HiScan
Data processing Normalized Average Beta calculated using the SeSame package in R
 
Submission date Oct 30, 2023
Last update date Oct 30, 2024
Contact name Emma Walker
E-mail(s) [email protected]
Organization name University of Exeter
Street address RILD Barrack Rd
City Exeter
ZIP/Postal code EX2 5DW
Country United Kingdom
 
Platform ID GPL28271
Series (2)
GSE246559 Methylomic signatures of tau and beta amyloid in transgenic mouse models of Alzheimer’s disease neuropathology [HorvathMammalMethylChip40 Methylation Beadchip]
GSE246561 Methylomic signatures of tau and beta amyloid in transgenic mouse models of Alzheimer’s disease neuropathology

Data table header descriptions
ID_REF
VALUE Normalized Average Beta values

Data table
ID_REF VALUE
cg00001364 0.886803958056127
cg00001582 0.0745851626230303
cg00002920 0.748102890824574
cg00003994 0.0540656158246809
cg00004555 0.247338088417222
cg00005271 0.880886350220746
cg00006213 0.823733026737775
cg00010926 0.94603600006498
cg00010977 0.925216484390093
cg00013247 0.685177111081182
cg00014011 0.282005303719517
cg00015319 0.139985676303566
cg00016215 0.601427663638212
cg00017571 0.930293212675878
cg00019068 0.92812959485407
cg00021588 0.940251789122823
cg00022035 0.893581484785913
cg00027030 0.961178260716888
cg00029553 0.931720077598507
cg00029755 0.687803649495824

Total number of rows: 23633

Table truncated, full table size 671 Kbytes.




Supplementary file Size Download File type/resource
GSM7871333_204027420027_R04C02_Grn.idat.gz 380.9 Kb (ftp)(http) IDAT
GSM7871333_204027420027_R04C02_Red.idat.gz 381.8 Kb (ftp)(http) IDAT

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