|
| Status |
Public on Dec 31, 2019 |
| Title |
16BC_004 |
| Sample type |
RNA |
| |
|
| Source name |
FFPE
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: breast cancer
|
| Extracted molecule |
total RNA |
| Extraction protocol |
The RNA for the Clariom™ D study was extracted from tissue fixed in formaldehyde and embedded in paraffin, preserved at room temperature. Four sections of 20 μm from breast cancer tumour paraffin embedded were used. The extraction of the RNA material was carried out using the commercial kit RecoverAll ™ Total Nucleic Acid Isolation Kit from ambion® (Applied Biosystems ™ by Life Technologies ™, Carlsbad, California, USA)
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
Hybridization and scanning were performed according to the Clariom D standard protocol
|
| Scan protocol |
Hybridization and scanning were performed according to the Clariom D standard protocol
|
| Data processing |
Data quality of *.CEL sample files was analyzed by affy package from R/Bioconductor and Transcriptome Analysis Console 4.0
|
| |
|
| Submission date |
Feb 25, 2019 |
| Last update date |
Jan 01, 2020 |
| Contact name |
Sara OLTRA SANCHIS |
| E-mail(s) |
[email protected]
|
| Phone |
961973540
|
| Organization name |
INCLIVA
|
| Department |
Medical Oncology
|
| Lab |
Cancer Functional Genomics
|
| Street address |
Avda Menéndez Pelayo, 4 accesorio
|
| City |
Valencia |
| State/province |
Valencia |
| ZIP/Postal code |
46010 |
| Country |
Spain |
| |
|
| Platform ID |
GPL23126 |
| Series (1) |
| GSE127067 |
Clariom D expression in breast cancer samples |
|
