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Series GSE85729 Query DataSets for GSE85729
Status Public on Aug 01, 2017
Title Increased tumourigenesis in ApcMin/+ mice fed with a Western-type diet associates with changes in PDK4, Erk/Akt and mTor pathways, intestinal immunity and the expression of energy metabolism-related genes
Organism Mus musculus
Experiment type Expression profiling by array
Summary Western diet enhances intestinal tumorigenesis in Min/+ mice, associating with mucosal metabolic and inflammatory stress and loss of Apc heterozygosity
We investigated the interaction of WD and heterozygous mutation in the Apc gene in the histologically normal intestinal mucosa of ApcMin/+ (Min/+) mice. AIN-93G diet vs. a diet modified from AIN-93G, with high fat and low fiber, vitamin D, calcium and folate. (66.4% of total fat from milk, and 33.6% from rapeseed and sunflower oil)
 
Overall design RNA from 1-3 mice small intestine per chip. Controls vs Western diet, males vs. females
 
Contributor(s) Niku M, Pajari A, Sarantaus L, Päivärinta E, Storvik M, Heiman-Lindh A, Suokas S, Nyström M, Mutanen M
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Submission date Aug 17, 2016
Last update date Nov 01, 2017
Contact name Markus Storvik
Organization name University of Eastern Finland
Department Pharmacology
Street address University of Eastern Finland
City Kuopio
ZIP/Postal code 70211
Country Finland
 
Platforms (1)
GPL11202 Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Probe Name version)
Samples (8)
GSM2283227 Control-Males-1
GSM2283228 Control-Males-2
GSM2283229 Control-Females-1
Relations
BioProject PRJNA339215

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85729_RAW.tar 17.3 Mb (http)(custom) TAR (of TXT)
GSE85729_normalised_data.xls.gz 2.2 Mb (ftp)(http) XLS
Processed data included within Sample table
Processed data are available on Series record

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