GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Series GSE54438

Query DataSets for GSE54438

Status

Public on Feb 12, 2014

Title

Genome-wide analysis of H3K9me2 and JIL-1 kinase mediated histone H3S10 phosphorylation in drosophila [ChIP-seq: 13 samples]

Organism

Drosophila melanogaster

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

In this study we have determined the genome-wide relationship of JIL-1 kinase mediated H3S10 phosphorylation with gene expression and the distribution of the epigenetic H3K9me2 mark. We show in wild-type salivary gland cells that the H3S10ph mark is predominantly enriched at active genes whereas the H3K9me2 mark largely is associated with inactive genes.

Overall design

Examination of 2 different histone modifications in 2 genotype types.

Contributor(s)

Cai W, Wang C, Li Y, Shen L, Liu S, Yao C, Bao X, Schnable PS, Girton J, Johansen J, Johansen KM

Citation(s)

24598257

Submission date

Jan 27, 2014

Last update date

May 15, 2019

Contact name

Jorgen Johansen

E-mail(s)

[email protected]

Phone

5152949783

Organization name

Iowa State Universtiy

Department

BBMB

Lab

Johansen's Lab

Street address

MBB3142, Iowa State Univeristy

City

Ames

State/province

Iowa

ZIP/Postal code

50011

Country

USA

Platforms (2)

GPL9061	Illumina Genome Analyzer II (Drosophila melanogaster)
GPL13304	Illumina HiSeq 2000 (Drosophila melanogaster)

Samples (13)

More...

GSM1315380	5C9_1 Sample 1
GSM1315381	5C9_2 Sample 2
GSM1315382	H3S10ph_CS Sample 3

This SubSeries is part of SuperSeries:

GSE41047

Genome-wide analysis of regulation of gene expression and H3K9me2 distribution by JIL-1 kinase mediated histone H3S10 phosphorylation in drosophila

Relations

BioProject

PRJNA236508

SRA

SRP035881

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE54438_5C9_2_control_afterfiting_2L.wig.gz	6.8 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_2LHet.wig.gz	73.9 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_2R.wig.gz	6.4 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_2RHet.wig.gz	620.1 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_3L.wig.gz	7.3 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_3LHet.wig.gz	539.4 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_3R.wig.gz	8.4 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_3RHet.wig.gz	414.3 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_4.wig.gz	388.1 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_U.wig.gz	1.1 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_Uextra.wig.gz	3.9 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_X.wig.gz	6.5 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_XHet.wig.gz	51.7 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_YHet.wig.gz	22.4 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_control_afterfiting_dmel_mitochondrion_genome.wig.gz	5.7 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_2L.wig.gz	5.7 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_2LHet.wig.gz	58.1 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_2R.wig.gz	5.6 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_2RHet.wig.gz	451.8 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_3L.wig.gz	6.3 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_3LHet.wig.gz	377.4 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_3R.wig.gz	7.3 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_3RHet.wig.gz	280.4 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_4.wig.gz	362.2 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_U.wig.gz	764.0 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_Uextra.wig.gz	2.9 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_X.wig.gz	5.6 Mb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_XHet.wig.gz	39.9 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_YHet.wig.gz	13.2 Kb	(ftp)(http)	WIG
GSE54438_5C9_2_treat_afterfiting_dmel_mitochondrion_genome.wig.gz	5.4 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_2L.wig.gz	7.3 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_2LHet.wig.gz	76.6 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_2R.wig.gz	6.8 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_2RHet.wig.gz	655.1 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_3L.wig.gz	7.8 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_3LHet.wig.gz	567.8 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_3R.wig.gz	9.0 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_3RHet.wig.gz	503.4 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_4.wig.gz	414.4 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_U.wig.gz	1.5 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_Uextra.wig.gz	5.6 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_X.wig.gz	7.0 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_XHet.wig.gz	56.5 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_YHet.wig.gz	31.1 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_control_afterfiting_dmel_mitochondrion_genome.wig.gz	5.6 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_2L.wig.gz	6.8 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_2LHet.wig.gz	77.8 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_2R.wig.gz	6.3 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_2RHet.wig.gz	684.1 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_3L.wig.gz	7.2 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_3LHet.wig.gz	591.5 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_3R.wig.gz	8.3 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_3RHet.wig.gz	534.8 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_4.wig.gz	422.2 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_U.wig.gz	1.7 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_Uextra.wig.gz	6.2 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_X.wig.gz	6.6 Mb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_XHet.wig.gz	57.2 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_YHet.wig.gz	31.3 Kb	(ftp)(http)	WIG
GSE54438_K9Z2_treat_afterfiting_dmel_mitochondrion_genome.wig.gz	4.5 Kb	(ftp)(http)	WIG
GSE54438_RAW.tar	380.0 Kb	(http)(custom)	TAR (of BED)
GSE54438_WTK9_control_afterfiting_2L.wig.gz	6.9 Mb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_2LHet.wig.gz	77.6 Kb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_2R.wig.gz	6.5 Mb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_2RHet.wig.gz	660.8 Kb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_3L.wig.gz	7.4 Mb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_3LHet.wig.gz	575.9 Kb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_3R.wig.gz	8.6 Mb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_3RHet.wig.gz	460.5 Kb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_4.wig.gz	393.5 Kb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_U.wig.gz	1.3 Mb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_Uextra.wig.gz	4.6 Mb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_X.wig.gz	6.6 Mb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_XHet.wig.gz	53.9 Kb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_YHet.wig.gz	27.2 Kb	(ftp)(http)	WIG
GSE54438_WTK9_control_afterfiting_dmel_mitochondrion_genome.wig.gz	6.0 Kb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_2L.wig.gz	6.7 Mb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_2LHet.wig.gz	78.7 Kb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_2R.wig.gz	6.3 Mb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_2RHet.wig.gz	674.2 Kb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_3L.wig.gz	7.2 Mb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_3LHet.wig.gz	588.4 Kb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_3R.wig.gz	8.3 Mb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_3RHet.wig.gz	469.2 Kb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_4.wig.gz	392.4 Kb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_U.wig.gz	1.4 Mb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_Uextra.wig.gz	5.0 Mb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_X.wig.gz	6.5 Mb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_XHet.wig.gz	53.8 Kb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_YHet.wig.gz	26.1 Kb	(ftp)(http)	WIG
GSE54438_WTK9_treat_afterfiting_dmel_mitochondrion_genome.wig.gz	5.4 Kb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_2L.wig.gz	6.9 Mb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_2LHet.wig.gz	77.6 Kb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_2R.wig.gz	6.5 Mb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_2RHet.wig.gz	660.8 Kb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_3L.wig.gz	7.4 Mb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_3LHet.wig.gz	575.9 Kb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_3R.wig.gz	8.6 Mb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_3RHet.wig.gz	460.5 Kb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_4.wig.gz	393.4 Kb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_U.wig.gz	1.3 Mb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_Uextra.wig.gz	4.6 Mb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_X.wig.gz	6.6 Mb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_XHet.wig.gz	53.9 Kb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_YHet.wig.gz	27.1 Kb	(ftp)(http)	WIG
GSE54438_s10_control_afterfiting_dmel_mitochondrion_genome.wig.gz	5.9 Kb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_2L.wig.gz	6.1 Mb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_2LHet.wig.gz	64.1 Kb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_2R.wig.gz	5.7 Mb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_2RHet.wig.gz	552.6 Kb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_3L.wig.gz	6.5 Mb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_3LHet.wig.gz	485.3 Kb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_3R.wig.gz	7.6 Mb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_3RHet.wig.gz	401.5 Kb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_4.wig.gz	346.7 Kb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_U.wig.gz	1.1 Mb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_Uextra.wig.gz	4.1 Mb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_X.wig.gz	5.9 Mb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_XHet.wig.gz	46.3 Kb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_YHet.wig.gz	18.9 Kb	(ftp)(http)	WIG
GSE54438_s10_treat_afterfiting_dmel_mitochondrion_genome.wig.gz	4.4 Kb	(ftp)(http)	WIG
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file