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GEO accession:
Series GSE42834
Query DataSets for GSE42834
Status
Public on Oct 31, 2013
Title
Human whole blood microarray study to compare patients with tuberculosis, sarcoidosis, pneumonia, and lung cancer
Organism
Homo sapiens
Experiment type
Expression profiling by array
Summary
This SuperSeries is composed of the SubSeries listed below.
[Third party comment] Samples with identical non-normalized expression values are identified at:
https://colab.research.google.com/drive/1swvQGf-ZLAWnZw-7bOCmsypzzAnCDGUR#scrollTo=mIqv_oTHc6ns
Overall design
Refer to individual Series
Citation(s)
23940611
Submission date
Dec 10, 2012
Last update date
Nov 28, 2018
Contact name
Chloe Bloom
Organization name
MRC National Institute for Medical Research
Street address
The Ridgeway
City
London
ZIP/Postal code
NW7 1AA
Country
United Kingdom
Platforms (1)
GPL10558
Illumina HumanHT-12 V4.0 expression beadchip
Samples (356)
Less...
More...
GSM1050732
TB Sample 1 validation set
GSM1050733
Sarcoid Sample 2 validation set
GSM1050734
TB Sample 3 validation set
GSM1050735
TB Sample 4 validation set
GSM1050736
TB Sample 5 validation set
GSM1050737
TB Sample 6 validation set
GSM1050738
TB Sample 7 validation set
GSM1050739
TB Sample 8 validation set
GSM1050740
TB Sample 9 validation set
GSM1050741
Control Sample 10 validation set
GSM1050742
Control Sample 11 validation set
GSM1050743
Control Sample 12 validation set
GSM1050744
Control Sample 13 validation set
GSM1050745
Control Sample 14 validation set
GSM1050746
Control Sample 15 validation set
GSM1050747
Control Sample 16 validation set
GSM1050748
Sarcoid Sample 17 validation set
GSM1050749
Control Sample 18 validation set
GSM1050750
Control Sample 19 validation set
GSM1050751
Control Sample 20 validation set
GSM1050752
Control Sample 21 validation set
GSM1050753
Control Sample 22 validation set
GSM1050754
Sarcoid Sample 23 validation set
GSM1050755
Control Sample 24 validation set
GSM1050756
Control Sample 25 validation set
GSM1050757
Control Sample 26 validation set
GSM1050758
Sarcoid Sample 27 validation set
GSM1050759
Sarcoid Sample 28 validation set
GSM1050760
Sarcoid Sample 29 validation set
GSM1050761
Sarcoid Sample 30 validation set
GSM1050762
Sarcoid Sample 31 validation set
GSM1050763
Sarcoid Sample 32 validation set
GSM1050764
Control Sample 33 validation set
GSM1050765
Control Sample 34 validation set
GSM1050766
Sarcoid Sample 35 validation set
GSM1050767
Sarcoid Sample 36 validation set
GSM1050768
Control Sample 37 validation set
GSM1050769
Control Sample 38 validation set
GSM1050770
Control Sample 39 validation set
GSM1050771
Control Sample 40 validation set
GSM1050772
Control Sample 41 validation set
GSM1050773
Control Sample 42 validation set
GSM1050774
Sarcoid Sample 1 test set
GSM1050775
Sarcoid Sample 2 test set
GSM1050776
Cancer Sample 3 test set
GSM1050777
Pneumonia Sample 4 test set
GSM1050778
Sarcoid Sample 5 test set
GSM1050779
Sarcoid Sample 6 test set
GSM1050780
Sarcoid Sample 7 test set
GSM1050781
Control Sample 8 test set
GSM1050782
Control Sample 9 test set
GSM1050783
Sarcoid Sample 10 test set
GSM1050784
Sarcoid Sample 11 test set
GSM1050785
Control Sample 12 test set
GSM1050786
Control Sample 13 test set
GSM1050787
Control Sample 14 test set
GSM1050788
Control Sample 15 test set
GSM1050789
Sarcoid Sample 16 test set
GSM1050790
Sarcoid Sample 17 test set
GSM1050791
Sarcoid Sample 18 test set
GSM1050792
Sarcoid Sample 19 test set
GSM1050793
Sarcoid Sample 20 test set
GSM1050794
Control Sample 21 test set
GSM1050795
Cancer Sample 22 test set
GSM1050796
Control Sample 23 test set
GSM1050797
Sarcoid Sample 24 test set
GSM1050798
Sarcoid Sample 25 test set
GSM1050799
Control Sample 26 test set
GSM1050800
Control Sample 27 test set
GSM1050801
Pneumonia Sample 28 test set
GSM1050802
Sarcoid Sample 29 test set
GSM1050803
Control Sample 30 test set
GSM1050804
Control Sample 31 test set
GSM1050805
Control Sample 32 test set
GSM1050806
Control Sample 33 test set
GSM1050807
Sarcoid Sample 34 test set
GSM1050808
Control Sample 35 test set
GSM1050809
Control Sample 36 test set
GSM1050810
Control Sample 37 test set
GSM1050811
Cancer Sample 38 test set
GSM1050812
Control Sample 39 test set
GSM1050813
Sarcoid Sample 40 test set
GSM1050814
Cancer Sample 41 test set
GSM1050815
Control Sample 42 test set
GSM1050816
Sarcoid Sample 43 test set
GSM1050817
Cancer Sample 44 test set
GSM1050818
Cancer Sample 45 test set
GSM1050819
Control Sample 46 test set
GSM1050820
Control Sample 47 test set
GSM1050821
Control Sample 48 test set
GSM1050822
Sarcoid Sample 49 test set
GSM1050823
Control Sample 50 test set
GSM1050824
Control Sample 51 test set
GSM1050825
Control Sample 52 test set
GSM1050826
Sarcoid Sample 53 test set
GSM1050827
Control Sample 54 test set
GSM1050828
Control Sample 55 test set
GSM1050829
Control Sample 56 test set
GSM1050830
Pneumonia Sample 57 test set
GSM1050831
Control Sample 58 test set
GSM1050832
Control Sample 59 test set
GSM1050833
Control Sample 60 test set
GSM1050834
Pneumonia Sample 61 test set
GSM1050835
Control Sample 62 test set
GSM1050836
Sarcoid Sample 63 test set
GSM1050837
Control Sample 64 test set
GSM1050838
Control Sample 65 test set
GSM1050839
Control Sample 66 test set
GSM1050840
Cancer Sample 67 test set
GSM1050841
Control Sample 68 test set
GSM1050842
Control Sample 69 test set
GSM1050843
Sarcoid Sample 70 test set
GSM1050844
Control Sample 71 test set
GSM1050845
Sarcoid Sample 72 test set
GSM1050846
Control Sample 73 test set
GSM1050847
Control Sample 74 test set
GSM1050848
Sarcoid Sample 75 test set
GSM1050849
Control Sample 76 test set
GSM1050850
Control Sample 77 test set
GSM1050851
Control Sample 78 test set
GSM1050852
Control Sample 79 test set
GSM1050853
Control Sample 80 test set
GSM1050854
Control Sample 81 test set
GSM1050855
Cancer Sample 82 test set
GSM1050856
Control Sample 83 test set
GSM1050857
Pneumonia Sample 84 test set
GSM1050858
Control Sample 85 test set
GSM1050859
Control Sample 86 test set
GSM1050860
Control Sample 87 test set
GSM1050861
Control Sample 88 test set
GSM1050862
Control Sample 89 test set
GSM1050863
Pneumonia Sample 90 test set
GSM1050864
Sarcoid Sample 91 test set
GSM1050865
TB Sample 92 test set
GSM1050866
TB Sample 93 test set
GSM1050867
TB Sample 94 test set
GSM1050868
TB Sample 95 test set
GSM1050869
TB Sample 96 test set
GSM1050870
TB Sample 97 test set
GSM1050871
TB Sample 98 test set
GSM1050872
TB Sample 99 test set
GSM1050873
TB Sample 100 test set
GSM1050874
TB Sample 101 test set
GSM1050875
TB Sample 102 test set
GSM1050876
Pneumonia_Treated 2132
GSM1050877
Pneumonia_Pre-treatment 2132
GSM1050878
Pneumonia_Pre-treatment 2102
GSM1050879
Pneumonia_Pre-treatment 2121
GSM1050880
Pneumonia_Pre-treatment 2105
GSM1050881
Pneumonia_Treated 2105
GSM1050882
Pneumonia_Treated 2101
GSM1050883
Pneumonia_Treated 2102
GSM1050884
Pneumonia_Treated 2121
GSM1050885
Pneumonia_Pre-treatment 2101
GSM1050928
Control Sample 1 training set
GSM1050929
Cancer Sample 2 training set
GSM1050930
Sarcoid Sample 3 training set
GSM1050931
Sarcoid Sample 4 training set
GSM1050932
Control Sample 5 training set
GSM1050933
Sarcoid Sample 6 training set
GSM1050934
TB Sample 7 training set
GSM1050935
Control Sample 8 training set
GSM1050936
Cancer Sample 9 training set
GSM1050937
Control Sample 10 training set
GSM1050938
Control Sample 11 training set
GSM1050939
Control Sample 12 training set
GSM1050940
Control Sample 13 training set
GSM1050941
Control Sample 14 training set
GSM1050942
TB Sample 15 training set
GSM1050943
TB Sample 16 training set
GSM1050944
Sarcoid Sample 17 training set
GSM1050945
Pneumonia Sample 18 training set
GSM1050946
Sarcoid Sample 19 training set
GSM1050947
Control Sample 20 training set
GSM1050948
TB Sample 21 training set
GSM1050949
Sarcoid Sample 22 training set
GSM1050950
Sarcoid Sample 23 training set
GSM1050951
Sarcoid Sample 24 training set
GSM1050952
Sarcoid Sample 25 training set
GSM1050953
TB Sample 26 training set
GSM1050954
Control Sample 27 training set
GSM1050955
TB Sample 28 training set
GSM1050956
Control Sample 29 training set
GSM1050957
Control Sample 30 training set
GSM1050958
Cancer Sample 31 training set
GSM1050959
Control Sample 32 training set
GSM1050960
Pneumonia Sample 33 training set
GSM1050961
Cancer Sample 34 training set
GSM1050962
Control Sample 35 training set
GSM1050963
Pneumonia Sample 36 training set
GSM1050964
Control Sample 37 training set
GSM1050965
Pneumonia Sample 38 training set
GSM1050966
TB Sample 39 training set
GSM1050967
Cancer Sample 40 training set
GSM1050968
Control Sample 41 training set
GSM1050969
Sarcoid Sample 42 training set
GSM1050970
Sarcoid Sample 43 training set
GSM1050971
TB Sample 44 training set
GSM1050972
Control Sample 45 training set
GSM1050973
Sarcoid Sample 46 training set
GSM1050974
Pneumonia Sample 47 training set
GSM1050975
Sarcoid Sample 48 training set
GSM1050976
Sarcoid Sample 49 training set
GSM1050977
Sarcoid Sample 50 training set
GSM1050978
Control Sample 51 training set
GSM1050979
TB Sample 52 training set
GSM1050980
Cancer Sample 53 training set
GSM1050981
Control Sample 54 training set
GSM1050982
Sarcoid Sample 55 training set
GSM1050983
Sarcoid Sample 56 training set
GSM1050984
Control Sample 57 training set
GSM1050985
Sarcoid Sample 58 training set
GSM1050986
Sarcoid Sample 59 training set
GSM1050987
Control Sample 60 training set
GSM1050988
TB Sample 61 training set
GSM1050989
Control Sample 62 training set
GSM1050990
Pneumonia Sample 63 training set
GSM1050991
Control Sample 64 training set
GSM1050992
Control Sample 65 training set
GSM1050993
Cancer Sample 66 training set
GSM1050994
TB Sample 67 training set
GSM1050995
Control Sample 68 training set
GSM1050996
TB Sample 69 training set
GSM1050997
Control Sample 70 training set
GSM1050998
Control Sample 71 training set
GSM1050999
Control Sample 72 training set
GSM1051000
Control Sample 73 training set
GSM1051001
TB Sample 74 training set
GSM1051002
TB Sample 75 training set
GSM1051003
Sarcoid Sample 76 training set
GSM1051004
Control Sample 77 training set
GSM1051005
Pneumonia Sample 78 training set
GSM1051006
Sarcoid Sample 79 training set
GSM1051007
Sarcoid Sample 80 training set
GSM1051008
TB Sample 81 training set
GSM1051009
Sarcoid Sample 82 training set
GSM1051010
Control Sample 83 training set
GSM1051011
Control Sample 84 training set
GSM1051012
Control Sample 85 training set
GSM1051013
Control Sample 86 training set
GSM1051014
TB Sample 87 training set
GSM1051015
Control Sample 88 training set
GSM1051016
Control Sample 89 training set
GSM1051017
Control Sample 90 training set
GSM1051018
Cancer Sample 91 training set
GSM1051019
Pneumonia Sample 92 training set
GSM1051020
Control Sample 93 training set
GSM1051021
Sarcoid Sample 94 training set
GSM1051022
Sarcoid Sample 95 training set
GSM1051023
Sarcoid Sample 1 2100 immunosuppressive treatment time pt. 2
GSM1051024
Sarcoid Sample 2 2018 immunosuppressive treatment time pt. 3
GSM1051025
Sarcoid Sample 3 2018 immunosuppressive treatment time pt. 2
GSM1051026
Sarcoid Sample 4 2099 immunosuppressive treatment time pt. 2
GSM1051027
Sarcoid Sample 5 6011 immunosuppressive treatment time pt. 2
GSM1051028
Sarcoid Sample 6 2099 immunosuppressive treatment time pt. 2
GSM1051029
Sarcoid Sample 7 2099 Pre-treatment time pt. 1
GSM1051030
Sarcoid Sample 8 2018 Pre-treatment time pt. 1
GSM1051031
Sarcoid Sample 9 2100 Pre-treatment time pt. 1
GSM1051032
Sarcoid Sample 10 6011 Pre-treatment time pt. 1
GSM1051033
Sarcoid Sample 11 2010 Pre-treatment time pt. 1
GSM1051034
Sarcoid Sample 12 6009 immunosuppressive treatment time pt. 2
GSM1051035
Sarcoid Sample 13 2140 immunosuppressive treatment time pt. 2
GSM1051036
Sarcoid Sample 14 2140 Pre-treatment time pt. 1
GSM1051037
Sarcoid Sample 15 6009 Pre-treatment time pt. 1
GSM1051038
Sarcoid Sample 16 2010 immunosuppressive treatment time pt. 2
GSM1051039
Sarcoid Sample 17 2100 immunosuppressive treatment time pt. 3
GSM1051040
TB_Whole blood Sample 1 cell separation
GSM1051041
Control_CD4 Sample 2 cell separation
GSM1051042
TB_PBMC Sample 3 cell separation
GSM1051043
Sarcoid_CD8 Sample 4 cell separation
GSM1051044
Sarcoid_CD4 Sample 5 cell separation
GSM1051045
TB_PBMC Sample 6 cell separation
GSM1051046
Sarcoid_Whole blood Sample 7 cell separation
GSM1051047
Control_CD8 Sample 8 cell separation
GSM1051048
TB_CD4 Sample 9 cell separation
GSM1051049
TB_CD8 Sample 10 cell separation
GSM1051050
Sarcoid_CD8 Sample 11 cell separation
GSM1051051
TB_CD15 Sample 12 cell separation
GSM1051052
Control_PBMC Sample 13 cell separation
GSM1051053
Control_Whole blood Sample 14 cell separation
GSM1051054
TB_CD4 Sample 15 cell separation
GSM1051055
Control_CD4 Sample 16 cell separation
GSM1051056
Sarcoid_CD8 Sample 17 cell separation
GSM1051057
Sarcoid_CD15 Sample 18 cell separation
GSM1051058
Control_CD8 Sample 19 cell separation
GSM1051059
Control_CD8 Sample 20 cell separation
GSM1051060
Sarcoid_CD15 Sample 21 cell separation
GSM1051061
Control_CD14 Sample 22 cell separation
GSM1051062
Sarcoid_Whole blood Sample 23 cell separation
GSM1051063
TB_Whole blood Sample 24 cell separation
GSM1051064
TB_CD8 Sample 25 cell separation
GSM1051065
Sarcoid_PBMC Sample 26 cell separation
GSM1051066
Control_PBMC Sample 27 cell separation
GSM1051067
Control_CD14 Sample 28 cell separation
GSM1051068
Control_PBMC Sample 29 cell separation
GSM1051069
Control_PBMC Sample 30 cell separation
GSM1051070
Sarcoid_CD4 Sample 31 cell separation
GSM1051071
Control_CD8 Sample 32 cell separation
GSM1051072
TB_CD8 Sample 33 cell separation
GSM1051073
Sarcoid_CD14 Sample 34 cell separation
GSM1051074
Sarcoid_CD15 Sample 35 cell separation
GSM1051075
Sarcoid_CD4 Sample 36 cell separation
GSM1051076
TB_CD14 Sample 37 cell separation
GSM1051077
Sarcoid_PBMC Sample 38 cell separation
GSM1051078
Sarcoid_PBMC Sample 39 cell separation
GSM1051079
Sarcoid_CD8 Sample 40 cell separation
GSM1051080
Sarcoid_Whole blood Sample 41 cell separation
GSM1051081
Control_CD15 Sample 42 cell separation
GSM1051082
TB_CD4 Sample 43 cell separation
GSM1051083
Control_CD15 Sample 44 cell separation
GSM1051084
Control_CD14 Sample 45 cell separation
GSM1051085
Control_CD4 Sample 46 cell separation
GSM1051086
Control_CD15 Sample 47 cell separation
GSM1051087
TB_Whole blood Sample 48 cell separation
GSM1051088
TB_PBMC Sample 49 cell separation
GSM1051089
TB_CD15 Sample 50 cell separation
GSM1051090
TB_PBMC Sample 51 cell separation
GSM1051091
Sarcoid_CD8 Sample 52 cell separation
GSM1051092
Sarcoid_CD14 Sample 53 cell separation
GSM1051093
Sarcoid_Whole blood Sample 54 cell separation
GSM1051094
Sarcoid_CD14 Sample 55 cell separation
GSM1051095
Control_CD4 Sample 56 cell separation
GSM1051096
TB_CD4 Sample 57 cell separation
GSM1051097
Control_PBMC Sample 58 cell separation
GSM1051098
TB_PBMC Sample 59 cell separation
GSM1051099
TB_Whole blood Sample 60 cell separation
GSM1051100
TB_CD8 Sample 61 cell separation
GSM1051101
Control_CD14 Sample 62 cell separation
GSM1051102
TB_CD14 Sample 63 cell separation
GSM1051103
TB_CD15 Sample 64 cell separation
GSM1051104
Sarcoid_PBMC Sample 65 cell separation
GSM1051105
Sarcoid_CD4 Sample 66 cell separation
GSM1051106
Control_Whole blood Sample 67 cell separation
GSM1051107
TB_CD4 Sample 68 cell separation
GSM1051108
TB_CD14 Sample 69 cell separation
GSM1051109
TB_CD8 Sample 70 cell separation
GSM1051110
TB_CD14 Sample 71 cell separation
GSM1051111
Control_CD15 Sample 72 cell separation
GSM1051112
Sarcoid_CD15 Sample 73 cell separation
GSM1051113
Control_CD4 Sample 74 cell separation
GSM1051114
TB_Whole blood Sample 75 cell separation
GSM1051115
TB_CD15 Sample 76 cell separation
GSM1051116
Control_CD8 Sample 77 cell separation
GSM1051117
Sarcoid_CD4 Sample 78 cell separation
GSM1051118
TB_CD15 Sample 79 cell separation
GSM1051119
Sarcoid_CD15 Sample 80 cell separation
GSM1051120
Control_Whole blood Sample 81 cell separation
GSM1051121
Sarcoid_CD14 Sample 82 cell separation
GSM1051122
Sarcoid_PBMC Sample 83 cell separation
GSM1051123
Control_CD15 Sample 84 cell separation
GSM1051124
Control_Whole blood Sample 85 cell separation
GSM1051125
TB_CD14 Sample 86 cell separation
GSM1051126
Sarcoid_Whole blood Sample 87 cell separation
GSM1051127
Sarcoid_CD14 Sample 88 cell separation
GSM1051128
Control_CD14 Sample 89 cell separation
GSM1051129
Control_Whole blood Sample 90 cell separation
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE42825
Human whole blood microarray study to compare patients with tuberculosis, sarcoidosis, pneumonia, and lung cancer (validation)
GSE42826
Human whole blood microarray study to compare patients with tuberculosis, sarcoidosis, pneumonia, and lung cancer (test)
GSE42827
Human whole blood microarray study to compare patients with tuberculosis, sarcoidosis, pneumonia, and lung cancer (pneumonia treated)
GSE42830
Human whole blood microarray study to compare patients with tuberculosis, sarcoidosis, pneumonia, and lung cancer (training)
GSE42831
Human whole blood microarray study to compare patients with tuberculosis, sarcoidosis, pneumonia, and lung cancer (sarcoidosis)
GSE42832
Microarray study using whole blood and purified leucocyte populations from healthy controls and patients with tuberculosis or sarcoidosis with tuberculosis and sarcoidosis
Relations
BioProject
PRJNA183532
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE42834_RAW.tar
26.2 Mb
(http)
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