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GEO accession:
Series GSE167259
Query DataSets for GSE167259
Status
Public on Mar 25, 2021
Title
Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair
Organisms
Homo sapiens
;
Mus musculus
;
Rattus norvegicus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33767446
Submission date
Feb 22, 2021
Last update date
Apr 14, 2021
Contact name
Wei Wu
Organization name
Center for Excellence in Molecular Cell Science
Department
Center for Excellence in Molecular Cell Science
Street address
320 yueyang road
City
Shanghai
State/province
Shanghai
ZIP/Postal code
200031
Country
China
Platforms (5)
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GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL21626
NextSeq 550 (Mus musculus)
GPL21697
NextSeq 550 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL25029
NextSeq 550 (Rattus norvegicus)
Samples (109)
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GSM5100364
ATAC-seq
GSM5100365
H3K4me1 ChIP-seq in iNeuron
GSM5100366
H3K27ac ChIP-seq in iNeuron
GSM5100367
MLL4 ChIP-seq in iNeuron
GSM5100368
CTCF ChIP-seq in iNeuron
GSM5100369
H3K4me3 ChIP-seq in iNeuron
GSM5100370
H3K36me3 ChIP-seq in iNeuron
GSM5100371
H3K27me3 ChIP-seq in iNeuron
GSM5100372
H3K9me3 ChIP-seq in iNeuron
GSM5100373
PAR ChIP-seq in iNeuron
GSM5100374
XRCC1 ChIP-seq in iNeuron
GSM5100375
Pol II ChIP-seq in iNeuron
GSM5100376
input in iNeuron
GSM5100377
H3K4me1 ChIP-seq in rat primary neuron
GSM5100378
XRCC1 ChIP-seq in rat primary neuron
GSM5100379
PAR ChIP-seq in preB wihout AsisI induction
GSM5100380
PAR ChIP-seq in preB wih AsisI induction
GSM5100381
PARGi PAR ChIP-seq in preB wih AsisI induction
GSM5100382
ddN S1-END-seq in iNeuron
GSM5100383
ddN END-seq in iNeuron
GSM5100384
NT for ddN S1-END-seq in iNeuron
GSM5100385
END-seq in iNeuron
GSM5100386
Nt.BspQ1 S1-END-seq in iNeuron
GSM5100387
NT for Nt.BspQ1 S1-END-seq in iNeuron
GSM5100388
Nickase with DOX S1-END-seq in MCF10A
GSM5100389
Nickase without DOX S1-END-seq in MCF10A
GSM5100390
HiC in iNeuron rep1
GSM5100391
HiC in iNeuron rep2
GSM5100392
HiC in iNeuron rep3
GSM5100393
HiC in iNeuron rep4
GSM5100394
RNA-seq in iNeuron rep1
GSM5100395
RNA-seq in iNeuron rep2
GSM5100396
RNA-seq in iNeuron rep3
GSM5100397
RNA-seq in iNeuron rep4
GSM5100398
RNA-seq in iNeuron rep5
GSM5100399
RNA-seq in iNeuron rep6
GSM5100400
SAR-seq in iNeuron rep1
GSM5100401
SAR-seq in iNeuron rep2
GSM5100402
SAR-seq in iNeuron rep3
GSM5100403
input for SAR-seq in iNeuron
GSM5100404
HU SAR-seq in iNeuron
GSM5100405
NT SAR-seq for HU in iNeuron
GSM5100406
POLAi SAR-seq in iNeuron rep1
GSM5100407
POLAi SAR-seq in iNeuron rep2
GSM5100408
NT SAR-seq for POLAi in iNeuron
GSM5100409
PARPi (Olaparib) SAR-seq in iNeuron
GSM5100410
PARPi (Talazoparib) SAR-seq in iNeuron
GSM5100411
PARPi (Veliparib) SAR-seq in iNeuron
GSM5100412
NT SAR-seq for PARPi in iNeuron
GSM5100413
sgPARP1 SAR-seq in iNeuron rep1
GSM5100414
sgPARP1 SAR-seq in iNeuron rep2
GSM5100415
sgControl SAR-seq for sgPARP1 in iNeuron rep1
GSM5100416
sgXRCC1 SAR-seq in iNeuron rep1
GSM5100417
sgXRCC1 SAR-seq in iNeuron rep2
GSM5100418
sgControl SAR-seq for sgXRCC1 in iNeuron rep1
GSM5100419
sgControl SAR-seq for sgXRCC1 in iNeuron rep2
GSM5100420
POLB sg1 SAR-seq in iNeuron rep1
GSM5100421
POLB sg1 SAR-seq in iNeuron rep2
GSM5100422
POLB sg2 SAR-seq in iNeuron rep1
GSM5100423
POLB sg2 SAR-seq in iNeuron rep2
GSM5100424
sgControl SAR-seq for sgPOLB in iNeuron rep1
GSM5100425
sgControl SAR-seq for sgPOLB in iNeuron rep2
GSM5100426
NT sgPOLB SAR-seq iNeuron rep1
GSM5100427
NT sgPOLB SAR-seq iNeuron rep2
GSM5100428
APH sgPOLB SAR-seq iNeuron rep1
GSM5100429
APH sgPOLB SAR-seq iNeuron rep2
GSM5100430
NT sgControl for sgPOLB and sgPNKP SAR-seq iNeuron rep1
GSM5100431
NT sgControl for sgPOLB and sgPNKP SAR-seq iNeuron rep2
GSM5100432
APH sgControl for sgPOLB SAR-seq iNeuron rep1
GSM5100433
APH sgControl for sgPOLB SAR-seq iNeuron rep2
GSM5100434
ETO SAR-seq in iNeuron rep1
GSM5100435
ETO SAR-seq in iNeuron rep2
GSM5100436
NT for ETO SAR-seq in iNeuron rep1
GSM5100437
NT for ETO SAR-seq in iNeuron rep2
GSM5100438
NT sgPNKP SAR-seq iNeuron rep1
GSM5100439
NT sgPNKP SAR-seq iNeuron rep2
GSM5100440
CPT sgPNKP SAR-seq iNeuron rep1
GSM5100441
CPT sgPNKP SAR-seq iNeuron rep2
GSM5100442
CPT sgControl for sgPNKP SAR-seq iNeuron rep1
GSM5100443
CPT sgControl for sgPNKP SAR-seq iNeuron rep2
GSM5100444
strandness SAR-seq in iNeuron rep1
GSM5100445
strandness SAR-seq in iNeuron rep2
GSM5100446
strandness SAR-seq in iNeuron rep3
GSM5100447
SAR-seq in Muscle rep1
GSM5100448
SAR-seq in Muscle rep2
GSM5100449
1hr SAR-seq in iNeuron rep1
GSM5100450
1hr SAR-seq in iNeuron rep2
GSM5100451
2hrs SAR-seq in iNeuron rep1
GSM5100452
2hrs SAR-seq in iNeuron rep2
GSM5100453
4hrs SAR-seq in iNeuron rep1
GSM5100454
4hrs SAR-seq in iNeuron rep2
GSM5100455
8hrs SAR-seq in iNeuron rep1
GSM5100456
8hrs SAR-seq in iNeuron rep2
GSM5100457
18hrs SAR-seq in iNeuron rep1
GSM5100458
18hrs SAR-seq in iNeuron rep2
GSM5100459
MMS SAR-seq in iNeuron rep1
GSM5100460
MMS SAR-seq in iNeuron rep2
GSM5100461
NT for MMS SAR-seq in iNeuron rep1
GSM5100462
NT for MMS SAR-seq in iNeuron rep2
GSM5100463
AsisI+DOX SAR-seq in preB
GSM5100464
AsisI-DOX SAR-seq in preB
GSM5100465
SAR-seq in rat primary neuron
GSM5100466
input for SAR-seq in primary neuron
GSM5100467
5fC SEAL-seq rep1
GSM5100468
5fC SEAL-seq rep2
GSM5100469
input for 5fC SEAL-seq
GSM5100470
5hmC SEAL-seq rep1
GSM5100471
5hmC SEAL-seq rep2
GSM5100472
input for 5hmC SEAL
This SuperSeries is composed of the following SubSeries:
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GSE167252
Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [ATAC-seq]
GSE167253
Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [ChIP-seq]
GSE167254
Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [END-seq]
GSE167255
Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [HiC]
GSE167256
Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [RNA-seq]
GSE167257
Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [SAR-seq]
GSE167258
Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [SEAL]
Relations
BioProject
PRJNA704019
Download family
Format
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SOFT
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TXT
Supplementary file
Size
Download
File type/resource
GSE167259_RAW.tar
16.6 Gb
(http)
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TAR (of BED, BW)
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