GSE44875 |
LncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression |
GSE45176 |
RNA-seq expression analysis to determine expression profile similarities between fibroblasts, induced endothelial cells from fibroblasts, and human dermal microvascular endothelial cells |
GSE46130 |
Transcriptional and Epigenetic Dynamics During Specification of Human Embryonic Stem Cells |
GSE46613 |
Genome-wide and experimental resolution of relative translation elongation speed at individual gene level in human cells |
GSE46876 |
The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq. |
GSE47987 |
FoxA1 inhibits androgen receptor expression and suppresses prostate cancer metastasis [DU145, ChIP-seq] |
GSE48035 |
The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq [Illumina HiSeq 2500] |
GSE48240 |
Long Noncoding RNA HNF1A-AS1 Regulates Proliferation and Migration in Esophageal Adenocarcinoma Cells |
GSE48592 |
Whole-genome Haplotype Reconstruction using Proximity-ligation and Shotgun Sequencing |
GSE48831 |
Viral small RNAs in Sindbis virus-infected mammalian cells |
GSE49035 |
De novo sequencing of circulating microRNAs in locally advanced breast cancer |
GSE49558 |
Stretch responsive miRNAs in human aortic valve interstitial cells |
GSE49831 |
Differential Protein Occupancy Profiling of the mRNA Transcriptome |
GSE50445 |
IVT-seq reveals extreme bias in RNA-sequencing |
GSE50676 |
Landscape and variation of RNA secondary structure across the human transcriptome |
GSE51041 |
DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis. |
GSE51299 |
The 3′ extremity of mRNA unveiled by TAIL-seq |
GSE51507 |
Comparison of microRNA Profiling Platforms (HTS) |
GSE51508 |
Comparison of microRNA Profiling Platforms |
GSE51672 |
A histone H3.3 Lysine 36 Trimethylation Reader Connects Chromatin to Regulated Pre-mRNA Processing |
GSE51867 |
whole-genome bisulfite sequencing (BS-seq) of HEK293 cells (HEK293-CT) and HEK293 cells stably over-expressing the BAHD1 gene (HEK-BAHD1) |
GSE51868 |
HEK293 cells (HEK293-CT) and HEK293 cells stably over-expressing the BAHD1 gene (HEK-BAHD1) |
GSE52285 |
A Werner syndrome stem cell model unveils heterochromatin alterations as a driver of human aging |
GSE52457 |
Global Reorganization of Chromatin Architecture during Embronic Stem Cell Differentiation |
GSE52529 |
Pseudo-temporal ordering of individual cells reveals regulators of differentiation |
GSE52617 |
Derivation of novel human ground state naïve pluripotent stem cells [ChIP-seq; RRBS-seq] |
GSE52633 |
MicroRNA Marker Based Prognostication of Oral Squamous Cell Carcinoma |
GSE52725 |
Next Generation Sequencing Facilitates Quantitative Analysis of effect of knockdown of GATA2 on AR binding sites |
GSE52824 |
Derivation of novel human ground state naïve pluripotent stem cells. |
GSE52935 |
SETX attenuates the antiviral innate immune response and controls viral biogenesis (GRO-Seq) |
GSE52936 |
SETX attenuates the antiviral innate immune response and controls viral biogenesis (ChIP-Seq) |
GSE52937 |
Senataxin suppresses the antiviral transcriptional response and controls viral biogenesis |
GSE52941 |
CIITA regulated genes in human B cells |
GSE53052 |
Comprehensive RNA-Chromatin Interactome Reveals Global and Specific Regulatory Functions by Long Non-Coding RNAs |
GSE53386 |
Single-cell RNA-Seq transcriptome analysis of circular RNAs in mouse embryos |
GSE53391 |
Human CLP1 mutations alter tRNA biogenesis affecting both peripheral and central nervous system function |
GSE53536 |
DNA binding activities of the C-clamp |
GSE53610 |
Dynamic and static maintenance of epigenetic memory in pluripotent and somatic cells [human] |
GSE53638 |
Characterization of differentiating adipose cells by high-throughput single-cell RNA-Seq |
GSE53695 |
nELAVL HITS-CLIP in Alzheimer's Disease patients |
GSE53697 |
RNAseq in Alzheimer's Disease patients |
GSE53698 |
RNAseq in IMR-32 neuroblastoma cells |
GSE53699 |
nELAVL HITS-CLIP and RNA-seq in Alzheimer's Disease patients and IMR-32 neuroblastoma cells |
GSE53927 |
Identification of beta-catenin binding regions in SW480 cells |
GSE54047 |
Reconstructing and reprogramming the tumor propagating potential of glioblastoma stem-like cells: ChIP-seq |
GSE54114 |
Poly(A) tail length change of miRNA targets in HeLa cells |
GSE54332 |
EDD: a program for detection of wide genomic enrichment domains robust against local variations [ChIP-Seq] |
GSE54333 |
EDD: a program for detection of wide genomic enrichment domains robust against local variations [RNA-Seq] |
GSE54334 |
EDD: a program for detection of wide genomic enrichment domains robust against local variations |
GSE54365 |
High-resolution mapping reveals a conserved, widespread, dynamic meiotically regulated mRNA methylation program |
GSE54471 |
Developmental Competence Encoded at the Level of Enhancers |
GSE54791 |
Reconstructing and reprogramming the tumor propagating potential of glioblastoma stem-like cells: RNA-seq |
GSE54792 |
Epigenomic profiling of stemness, differentiation and primary tissues in human glioblastoma |
GSE54845 |
MacroH2A1 ChIP-seq from IMR90 human primary lung fibroblasts |
GSE54846 |
RNA-seq from control and macroH2A1-depleted IMR90 primary human lung fibroblasts |
GSE54847 |
Exploring the role of macroH2A1 in transcription regulation in IMR90 primary human lung fibroblasts with RNA-seq and ChIP-seq |
GSE54960 |
Dynamic and static maintenance of epigenetic memory in pluripotent and somatic cells |
GSE54975 |
Lipid-induced epigenomic changes in human macrophages identify a coronary artery disease associated variant that regulates PPAP2B expression through altered C/EBP-beta binding |
GSE55007 |
Cooperativity and Equilibrium with FOXA1 Define Androgen Receptor Transcriptional Program |
GSE55032 |
Activation of the P-TEFb Complex by Lethal Prostate Cancer-Associated Enhancer RNAs |
GSE55043 |
Dendritic Cell Fate is Determined by BCL11A |
GSE55249 |
Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain |
GSE55391 |
TET1-mediated hydroxymethylation facilitates hypoxic gene induction in neuroblastoma |
GSE55426 |
Domains of genomewide gene expression dysregulation in Down syndrome |
GSE55504 |
Domains of genomewide gene expression dysregulation in Down syndrome [RNA-seq] |
GSE55506 |
Domains of genomewide gene expression dysregulation in Down syndrome [ChIP-seq] |
GSE55572 |
High-resolution mapping reveals a conserved, widespread, dynamic meiotically regulated mRNA methylation program [Hs] |
GSE55605 |
Role of Polycomb group proteins in the DNA damage response – a reassessment |
GSE55699 |
Host genomic regions susceptible to damage during H. pylori infection |
GSE55921 |
Bromodomain protein BRD4 is required for estrogen receptor-dependent transcription and enhancer activation [ChIP-seq] |
GSE55923 |
Bromodomain protein BRD4 is required for estrogen receptor-dependent transcription and enhancer activation |
GSE55949 |
Histone H3.3 and its proteolytically processed form drive a cellular senescence program |
GSE56022 |
Ligand-dependent genomic function of glucocorticoid receptor in triple-negative breast cancer |
GSE56051 |
Epigenetic Repogramming by an Environmental Carcinogen Through Chromatin Domain Disruption [ChIP-Seq] |
GSE56052 |
Epigenetic Repogramming by an Environmental Carcinogen Through Chromatin Domain Disruption [RNA-Seq] |
GSE56053 |
Epigenetic Repogramming by an Environmental Carcinogen Through Chromatin Domain Disruption |
GSE56144 |
Site-Specific Association with Host and Viral Chromatin by KSHV LANA and its Reversal during Lytic Reactivation |
GSE56189 |
Transcriptomic Analysis Of The Novel Middle East Respiratory Syndrome Coronavirus (MERS-CoV) |
GSE56192 |
Transcriptomic analysis of the Novel Middle East Respiratory Syndrome Coronavirus (Human, MRC5 cells) |
GSE56343 |
Next-generation sequencing facilitates quantitative analysis of AcKLF5 and unAcKLF5 transcriptomes in xenografts of DU-145 cell line |
GSE56398 |
Increased response to nicotine in human dopaminergic neurons derived from iPSC carrying the risk-associated SNP rs16969968 |
GSE56567 |
Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency (Chip-Seq) |
GSE56569 |
Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency |
GSE56614 |
Different miRNA expression profiles between human breast cancer turmors and serum |
GSE56623 |
RNAseq to investigate transcriptional changes in human MM cell lines due to panobinostat, 5-Azacytidine, panobinostat+5-Azacytidine or n-methyl-2-pyrroldine (NMP) treatments. |
GSE56748 |
MOV10 Is a 5' to 3' RNA Helicase Contributing to UPF1 mRNA Target Degradation by Translocation along 3'UTRs (expression) |
GSE56751 |
MOV10 Is a 5' to 3' RNA Helicase Contributing to UPF1 mRNA Target Degradation by Translocation along 3'UTRs |
GSE56785 |
RNA-Seq characterization of human H1-derived NPC differentiation timecourse |
GSE56787 |
DUX4-induced gene expression is the major molecular signature in FSHD skeletal muscle |
GSE56802 |
RNA helicase DDX21 coordinates transcription and noncoding RNA processing of the ribosomal pathway |
GSE56857 |
SPIB and BATF provide alternate determinants of IRF4 occupancy in Diffuse Large B-cell Lymphoma linked to disease heterogeneity |
GSE56862 |
Genome-wide quantification of microRNA processing efficiency from RNA-seq data |
GSE57012 |
Laser capture microdissection followed by next-generation sequencing identifies disease-related microRNAs in psoriatic skin that mirror the systemic psoriatic miRNome |
GSE57116 |
4sUDRB-seq: measuring transcription elongation and initiation genomewide |
GSE57149 |
Differential features of lamina-associated domains mapped by ChIP-sequencing from sonicated or micrococcal nuclease-digested chromatin |
GSE57179 |
Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms |
GSE57222 |
NSD3-NUT Fusion Oncoprotein in NUT Midline Carcinoma identified in 1221 patient-derived cell line by RNA-seq |
GSE57243 |
Cell-type restricted activity of hnRNPM promotes breast cancer metastasis via regulating alternative splicing |
GSE57278 |
A global regulatory mechanism for activating an exon network required for neurogenesis |
GSE57369 |
The chromatin modifier CHD8 targets autism risk genes during human neurodevelopment |
GSE57395 |
Direct Induction of Hematoendothelial Program in Human Pluripotent Stem Cells by Transcriptional Regulators |
GSE57431 |
HEXIM1 is induced by DHODH inhibition to suppress melanoma [ChIP-Seq] |
GSE57432 |
HEXIM1 is induced by DHODH inhibition to suppress melanoma |
GSE57503 |
Evaluation of RNA amplification and RNA-Seq library preparation protocols for spermatozoa RNA profiling |
GSE57723 |
Modulation of the TNF-induced macrophage response by synovial fibroblasts |
GSE57732 |
Genomic-scale identification of host genes regulated by EBV during lytic cycle [RNA-Seq] |
GSE57871 |
RNA-seq analysis of vorinostat-resistant HCT116 cells following gene knockdown of GLI1 or PSMD13 with or without vorinostat treatment |
GSE57872 |
Single cell RNA-seq of primary human glioblastomas |
GSE58122 |
Serial RNA-seq of a single human |
GSE58123 |
Modeling Familial Cancer with iPSC Approaches |
GSE58246 |
Genomic-scale identification of host genes regulated by EBV during the lytic cycle |
GSE58258 |
The LSD1/KDM1A neuro-specific isoform regulates neuronal differentiation through H3K9 demethylation [ChIP-Seq] |
GSE58335 |
Transcriptomic profiling of peripheral blood mononuclear cells from healthy individuals |
GSE58374 |
SMO variants explain the majority of drug resistance in basal cell carcinoma [exome-seq] |
GSE58375 |
SMO variants explain the majority of drug resistance in basal cell carcinoma [RNA-Seq] |
GSE58377 |
SMO variants explain the majority of drug resistance in basal cell carcinoma |
GSE58418 |
The ribonuclease activity of SAMHD1 is required for HIV-1 restriction |
GSE58534 |
PARP1- and CTCF-mediated interactions between active and repressed chromatin at the lamina promote oscillating transcription |
GSE58535 |
H3K9 methylation fine-tunes coordination of transcription by regulating the conformational plasticity of chromosomal folding [RNA-Seq] |
GSE58557 |
Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules [gene expression] |
GSE58641 |
Genome-wide map of long non-coding RNA steroid receptor RNA activator (SRA) and its associated RNA heliase p68 in human pluripotent stem cells NTERA2 |
GSE58680 |
Super-Enhancer-mediated Control of Liver Fibrosis by BET Bromodomain Proteins |
GSE58864 |
Extensive remodeling of DC function by rapid maturation-induced epigenetic gene silencing |
GSE58933 |
Hyper-excitability of Neurons generated from Patients with Bipolar Disorder |
GSE58939 |
Development of peptidomimetic inhibitors of the ERG transcription factor in prostate cancer (ChIP-seq) |
GSE58975 |
Development of peptidomimetic inhibitors of the ERG gene fusion product in prostate cancer |
GSE58989 |
DNMT1-associated long non-coding RNA regulate global gene expression and DNA methylation in colon cancer |
GSE59089 |
RNA-seq transcriptional profiling in primary human erythroid progenitor cells upon shRNA-mediated knockdown of PRC2 core subunits |
GSE59090 |
ChIP-seq and RNA-seq analysis of PRC2 core subunits in primary human erythroid progenitor cells |
GSE59233 |
Impaired DNA damage metabolism promotes autoimmunity in TREX1 deficiency |
GSE59290 |
MiRNA23B REGULATES SELF-RENEWAL AND CHEMORESISTANCE PROPERTIES OF COLON CANCER STEM CELLS |
GSE59530 |
TNFα Signaling Exposes Latent Estrogen Receptor Binding Sites in Breast Cancer Cells [ChIP-seq] |
GSE59598 |
mRNA expression in human DAOY cells |
GSE59626 |
Uridylation by TUT4 and TUT7 marks mRNA for degradation [RNA-Seq] |
GSE59627 |
Uridylation by TUT4 and TUT7 marks mRNA for degradation [TAIL-Seq] |
GSE59628 |
Uridylation by TUT4 and TUT7 marks mRNA for degradation |
GSE59657 |
An Oncogenic Super-Enhancer Formed through Somatic Mutation of a Noncoding Intergenic Element |
GSE59717 |
Wide-spread disruption of transcription termination in HSV-1 infection: Next generation sequencing of total and newly transcribed (4sU-RNA) RNA |
GSE59749 |
G9a/GLP-dependent H3K9me2 patterning alters chromatin structure at CpG islands in hematopoietic progenitors. |
GSE59767 |
N6-adenosine methylation in miRNAs |
GSE59820 |
Ribosome profiling on sections taken from a kidney tumor |
GSE59821 |
Restrictions in amino acid availability revealed by differential ribosome codon reading |
GSE59836 |
Recombination initiation maps of individual human genomes |
GSE59840 |
Dissecting non-coding and pathogen RNA-protein interactomes |
GSE59842 |
Genome wide DNA methylation of Epstein-Barr virus infected immortalized normal oral keratinocytes |
GSE59843 |
Genome wide DNA methylation and expression profiling of Epstein-Barr virus infected immortalized normal oral keratinocytes |
GSE59855 |
Gene expression profiling associated with knockdown of LKB1 in human intrahepatic cholangiocarcinoma |
GSE60045 |
A post-translational regulatory switch on UPF1 controls targeted mRNA degradation. |
GSE60047 |
Transcriptome-wide mapping reveals widespread dynamic regulated pseudouridylation of mRNA |
GSE60065 |
Chronic Myeloid Leukemia (CML), induced pluripotent stem cell (iPSC)-derived lin-CD34+CD45+ (iCD34) cell population |
GSE60119 |
Next Generation Sequencing Facilitates Quantitative Analysis of Normal Human Kidney Transcriptomes |
GSE60138 |
SOX17 Is a Critical Specifier of Human Primordial Germ Cell Fate |
GSE60156 |
The oncogenic microRNA hsa-mir-155-5p targets the transcription factor ELK3 and links it to the hypoxia response and the Hypoxia Inducible Factor HIF1α |
GSE60182 |
Integrative transcriptome-wide analyses reveal critical HER2-regulated mRNAs and lincRNAs in HER2+ breast cancer |
GSE60196 |
human 3' RACE |
GSE60197 |
Global 3' RACE in yeast and humans |
GSE60198 |
The Mpn1 exonuclease defines a novel spliceosomal snRNA decay pathway dependent on Rrp6 and Lsm2-8 complex |
GSE60200 |
Quantitative modeling of transcription factor binding specificities using DNA shape |
GSE60237 |
A hyper-dynamic nature of bivalent promoter states underlies coordinated developmental gene expression modules |
GSE60308 |
Selective reactivation of human X-linked genes in female fibroblasts reprogrammed by cell fusion |
GSE60328 |
Transcriptional profiling of CHB8 human embryonic stem cells with insulin receptor knockdown |
GSE60358 |
Mammalian NET-seq reveals genome-wide nascent transcription coupled to RNA processing |
GSE60378 |
Calibrating ChIP-seq with nucleosomal internal standards to measure histone modification density genome-wide |
GSE60434 |
Hypoxia-induced TET-TNFa-p38-MAPK signaling axis drives tumor malignancy of human breast cancer |
GSE60455 |
Analysis of transcription start sites from nascent RNA identifies a unified architecture of initiation at mammalian promoters and enhancers (PRO-seq) |
GSE60456 |
Analysis of transcription start sites from nascent RNA identifies a unified architecture of initiation at mammalian promoters and enhancers |
GSE60517 |
Drug specific epigenetic reprogramming leads to increased cellular invasion in ERα positive breast cancer via de novo cholesterol biosynthesis. |
GSE60530 |
Profile of gene expression in U87-MG xenografts expressing control vector (V0), the ubiquitin ligase KPC1 or the p50 subunit of the NF-kB transcription factor, using RNASeq analysis of transcripts mapped independently to the human and murine genomes |
GSE60603 |
An alternative pluripotent state confers interspecies chimaeric competency [RNA-Seq] |
GSE60605 |
An alternative pluripotent state confers interspecies chimaeric competency |
GSE60626 |
Activation of the Integrated Stress Response by a Jumonji Histone Demethylase Inhibitor Induces Pro-Apoptotic Metabolic Reprogramming in Multiple Myeloma |
GSE60872 |
The functional impact of RNA Polymerase II pausing across multiple mamamlian cell types |
GSE60883 |
RNA-seq of young and quiescent MRC-5 human fibroblasts |
GSE60897 |
Interaction with WDR5 promotes target gene recognition and tumorigenesis by MYC |
GSE60951 |
A unique chromatin complex occupies young alpha-satellite arrays of human centromeres |
GSE60988 |
Tracking distinct RNA populations using efficient and reversible covalent chemistry |
GSE60996 |
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics (RNA-Seq) |
GSE61130 |
Analysis of the senescent transcriptome upon expression of a ZFP36L1 phosphomutant |
GSE61133 |
MeDIP analysis of 5mC and 5hmC marks in human ataxia-telangiectasia cerebellum |
GSE61169 |
Selective loss of 5hmC links to A-T Purkinje cell vulnerability |
GSE61190 |
Epigenomic profiling of Non-small-cell Lung Cancer (NSCLC) cells with or without Eed |
GSE61238 |
Tranposable elements modulate human mRNAs and lncRNAs via specific RNA-protein interactions. |
GSE61255 |
SMYD2 specificly regulate BIX-01294 induced TP53 target genes revealed by RNA-Seq |
GSE61290 |
Myb-regulated transcriptome in pancreatic cancer |
GSE61343 |
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics |
GSE61390 |
Genetic Correction and Metabolic Rescue of Pluripotent Cells from Patients with mtDNA |
GSE61393 |
Ssu72 and Ser5P-RNAPII ChIPseq in hESCs. GROseq analysis in siCtrl and siSSu72 transfected hESCs. |
GSE61398 |
Direct identification of endogenous SMG6 targets and a preferred motif spanning SMG6 cleavage sites by parallel analysis of RNA ends in human cells |
GSE61549 |
A long non-coding RNA tunes PRC1 function during human and zebrafish development |
GSE61656 |
Coding mutations and loss-of-imprinting in human pluripotent cells derived by nuclear transfer and defined factors [RNA-Seq] |
GSE61657 |
Coding mutations and loss-of-imprinting in human pluripotent cells derived by nuclear transfer and defined factors |
GSE61742 |
Impact of regulatory variation from RNA to protein |
GSE61825 |
Emergence of neural crest identity is a key early step in melanoma formation [ChIP-Seq] |
GSE61852 |
YAP1 exerts its transcriptional control via TEAD-mediated activation of enhancers |
GSE61878 |
Genome wide binding of glucocorticoid receptor in dexamethasone treated human monocyte derived macrophages |
GSE61881 |
Divergent transcriptional activation by glucocorticoids in mouse and human macrophages is the result of gain and loss of enhancers |
GSE61951 |
Genome-wide chromatin analysis of Ewing sarcoma (ATAC-seq) |
GSE61953 |
Genome-wide chromatin analysis of Ewing sarcoma |
GSE61965 |
BRG1 recruitment by transcription factors MITF and SOX10 defines a specific configuration of regulatory elements in the melanocyte lineage (ChIP-seq) |
GSE61966 |
BRG1 recruitment by transcription factors MITF and SOX10 defines a specific configuration of regulatory elements in the melanocyte lineage (RNA-seq) |
GSE61967 |
BRG1 recruitment by transcription factors MITF and SOX10 defines a specific configuration of regulatory elements in the melanocyte lineage |
GSE62046 |
GRO-seq in HeLa cells |
GSE62047 |
Nuclear stability and transcriptional directionality separate functionally distinct RNA species. |
GSE62063 |
B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity |
GSE62077 |
RNA-Seq Samples of siTFE3 in 8988T PDA Cell Line to Investigate Transcriptional Control of the Autophagy-Lysosome System |
GSE62171 |
RNA Polymerase II-associated factor 1 regulates the release and phosphorylation of paused RNA Polymerase II |
GSE62193 |
Dissecting neural differentiation regulatory networks through epigenetic footprinting |
GSE62296 |
Convergent Sense/Antisense Transcription At Intragenic Super-Enhancers Targets AID-initiated Genomic Instability |
GSE62305 |
CRISPR Display: A modular method for locus-specific targeting of long noncoding RNAs and synthetic RNA devices in vivo [RIP-Seq] |
GSE62410 |
Transcriptome profiling of Normal and Cancerous Prostate Cells |
GSE62412 |
Targeting Transcriptional Addictions in Small Cell Lung Cancer with a Covalent CDK7 Inhibitor (ChIP-seq) |
GSE62520 |
RNA-sequencing of mRNAs from control and CAP-D3 deficient Salmonella infected HT-29 cells |
GSE62540 |
SMN2 splicing modifiers improve motor function and longevity in mice with spinal muscular atrophy |
GSE62563 |
Neuronal activity promotes glioma growth |
GSE62590 |
DNA demethylation by 5-aza-2'-deoxycytidine is imprinted targeted to euchromatin and has limited transcriptional consequences |
GSE62591 |
HEK 293T cells RNA-seq data treated with 5-aza-2-deoxycytidine |
GSE62592 |
HEK 293T cells HELP-tagging cytosine methylation data treated with 5-aza-2-deoxycytidine |
GSE62614 |
Targeting Transcriptional Addictions in Small Cell Lung Cancer with a Covalent CDK7 Inhibitor |
GSE62642 |
RNA-Seq Analysis in purified iPS cell-derived neuronal samples |
GSE62695 |
Genome-wide maps of RNAPII Ser5(P) in HEK 293T cells after treatment with 5-aza-CdR |
GSE62772 |
Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency [mRNA-Seq] |
GSE62776 |
Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency [small RNA-Seq] |
GSE62777 |
Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency |
GSE62804 |
An siRNA screen identifies CHD4 as a target for epigenetic therapy |
GSE62809 |
Predictive Value of MicroRNAs in the Progression of Oral Leukoplakias |
GSE62907 |
The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer |
GSE62936 |
RNA-Seq Analysis in hES/ iPS cell-derived neuronal samples |
GSE62952 |
Integrated genome and transcriptome sequencing from the same cell |
GSE62966 |
Analysis of allele specific expression and its chromatin state to identify genes that are escaping X chromosome inactivation |
GSE62974 |
RNA sequencing (RNA-SEQ) of EPAS1 knockdown by siRNA in endothelial cells |
GSE63018 |
Genome and transcriptome profiling of fibrolamellar carcinoma [RNA-Seq] |
GSE63034 |
Integrative analysis identifies targetable CREB1/FoxA1 transcriptional co-regulation as a predictor of prostate cancer recurrence |
GSE63086 |
Heterogeneous nuclear ribonucleoprotein C1/C2 links transcriptional and splicing actions of 1,25-dihydroxyvitamin D |
GSE63116 |
H3K9me3 ChIP-seq in HeLa cells lacking TASOR, MPP8, periphilin and SETDB1 |
GSE63153 |
The LSD1/KDM1A neuro-specific isoform regulates neuronal differentiation through H3K9 demethylation |
GSE63161 |
hiPSCs unravel aberrant TGFβ signaling as an etiology of left ventricular non-compaction |
GSE63218 |
Inhibitors of LSD1 target demethylase-independent activity to induce differentiation in acute myeloid leukemia [ChIP-Seq: histone modifications] |
GSE63222 |
Inhibitors of LSD1 target demethylase-independent activity to induce differentiation in acute myeloid leukemia |
GSE63265 |
Combinatorial targeting of nuclear export and translation of RNA inhibits aggressive B-cell lymphoma |
GSE63344 |
Gene expression profile of wt-, S473A- and S473D-KAP1-re-expression in KAP1-depleted MDA-MB-231 cell |
GSE63346 |
Pre-patterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B |
GSE63419 |
Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency [RRBS] |
GSE63420 |
Massive parallel sequencing uncovers actionable FGFR2-PPHLN1 fusion and ARAF mutations in intrahepatic cholangiocarcinoma |
GSE63494 |
A ChIP-seq spike-in method enables detection of global histone modification changes across the genome |
GSE63501 |
Dysregulation of microRNAs in neurodegeneration |
GSE63525 |
A three-dimensional map of the human genome at kilobase resolution reveals prinicples of chromatin looping |
GSE63537 |
RNA-seq analysis of TALEN-mediated LATS2 knockout HeLa-S3 cells |
GSE63538 |
LATS2 regulates repressive epigenetic integrity via regulation of Polycomb repressive complex 2 |
GSE63555 |
miR-191 regulates human cell proliferation and directly targets multiple oncogenes [seq] |
GSE63556 |
Genome wide miR-191 target profile determined by RIP and gene expression profiling |
GSE63646 |
Expression and Prognostic impact of LncRNAs in Acute Myeloid Leukemia |
GSE63648 |
Evolutionary changes in promoter and enhancer activity during human corticogenesis (human) |
GSE63649 |
Evolutionary changes in promoter and enhancer activity during human corticogenesis |
GSE63655 |
Chemical Pull-Down Reveals Comprehensive and Dynamic Pseudouridylation in Mammalian Transcriptome |
GSE63734 |
Next Generation Sequencing Facilitates Comparisons of Control and Schizophrenia-Patient derived hiPSC-derived neurons |
GSE63738 |
Next Generation Sequencing Facilitates Comparisons of Control and Schizophrenia-Patient derived hiPSC-derived NPCs |
GSE63743 |
Genome-Wide Mapping of 5-mC and 5-hmC in severely Preeclamptic Placentas. |
GSE63755 |
Defective removal of ribonucleotides from DNA promotes systemic autoimmunity |
GSE63782 |
Transcriptional plasticity promotes primary and acquired resistance to BET bromodomain inhibition |
GSE63807 |
Transcriptome of Stabilin-1 siRNA transfected human monocytes |
GSE63818 |
The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells |
GSE63872 |
Human Promoters Are Intrinsically Directional |
GSE63874 |
High-throughput sequencing of DNA G-quadruplex structures in the human genome |
GSE63887 |
RNA-sequencing of healthy human skeletal myocytes |
GSE63900 |
Dual RNA-sequencing of nontypeable Haemophilus influenzae and host cell transcriptomes reveals new aspects of host-pathogen interface |
GSE63933 |
Onchocerca-derived small RNAs in host nodules and serum |
GSE63935 |
Human pluripotent stem cell-derived neural constructs for predictive neurotoxicity screening |
GSE63938 |
Targeted CpG island methylation in human pluripotent stem cells |
GSE63986 |
Integrative Functional Characterization of Cancer-Testis Antigens Defines Obligate Participation in Multiple Hallmarks of Cancer |
GSE64016 |
Single cell RNA-seq data of human hESCs to evaluate Oscope - a statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-Seq |
GSE64098 |
Transcriptome profiling of human lung cancer cell lines. |
GSE64113 |
Comparison of poly(A) and capture RNA-seq: controlled degradation in vitro |
GSE64173 |
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (ATAC-Seq) |
GSE64179 |
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (mRNA-Seq) |
GSE64182 |
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (wtRNA-Seq) |
GSE64183 |
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells |
GSE64185 |
The activation of IL-1 induced enhancers depends on TAK1 kinase activity and NF-KB p65 [RNA-Seq] |
GSE64223 |
The activation of IL-1 induced enhancers depends on TAK1 kinase activity and NF-KB p65 [ChIP-Seq] |
GSE64224 |
The activation of IL-1 induced enhancers depends on TAK1 kinase activity and NF-KB p65 |
GSE64240 |
Identification of Tox chromatin binding properties and of its downstream targets by DamID |
GSE64243 |
A ChIP-seq spike-in method enables detection of global histone modification changes across the genome |
GSE64413 |
HITS-CLIP analysis uncovers a link between the Kaposi's sarcoma associated herpesvirus ORF57 protein and host pre-mRNA metabolism |
GSE64417 |
Induction of circular RNA in fetal heart development recapitulated in in vitro differentiation |
GSE64443 |
Exon-Intron circular RNAs regulate transcription in the nucleus |
GSE64504 |
Multiplexing of ChIP-seq samples for a model experimental condition has minimal impact on peak detection |
GSE64513 |
FOXD3 is a novel tumor suppressor in lung cancer |
GSE64550 |
shRNA knockdown of YAP1 in HCC364 cells, various drug conditions |
GSE64553 |
RNA-seq of human fibroblasts during normal aging and during aging with rotenone perturbation |
GSE64601 |
MacroH2A1 ChIP-seq from H-RasV12 expressing senescent IMR90 human primary lung fibroblasts |
GSE64615 |
hsa-miR-503, hsa-miR-103, and hsa-miR-494 genome wide target profiles [RNA-Seq and RIP-Seq] |
GSE64616 |
Genome-wide hsa-miR-503, hsa-miR-103, and hsa-miR-494 target profiles |
GSE64644 |
Vascular niche induction of hematopoietic progenitors from pluripotent stem cells |
GSE64712 |
Functional characterization of human T cell hyporesponsiveness induced by CTLA4-Ig |
GSE64758 |
Wnt3a-Activin A Synergy Induces eRNAPII Pause-Release and Counteracts a Yap1 Elongation Block during hESC Differentiation |
GSE64818 |
Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs |
GSE64864 |
Chronic growth factor signaling in Acute Myeloid Leukemia is connected to a specific chromatin signature [DNAse-Seq] |
GSE64874 |
Chronic growth factor signaling in Acute Myeloid Leukemia is connected to a specific chromatin signature |
GSE65107 |
Diarrhea in lymphocytic colitis: ERK1/2-dependent ENaC dysregulation and claudin-4-, -5- and -8-related barrier defects |
GSE65112 |
Genome-wide effect of inhibition of glutamine transporter ASCT2 in PC-3 cells by BenSer or GPNA |
GSE65138 |
Effect of cortistatin A (CA) on enhancer occupancy in CA-sensitive and -insensitive human cell lines |
GSE65161 |
Mediator kinase inhibition further activates super-enhancer-associated genes in AML |
GSE65196 |
Single-cell DNA methylome sequencing and bioinformatic inference of epigenetic cell state dynamics |
GSE65201 |
CDK7-dependent Transcriptional Addition in Basal-like Breast Cancer (ChIP-Seq) |
GSE65299 |
ALKBH1-Mediated Transfer RNA Demethylation |
GSE65313 |
Breast Cancer Suppressor Role of RUNX1: Estrogen-dependent Regulation of AXIN1 and b-catenin |
GSE65323 |
Genome wide extracellular signal-regulated kinase (ERK) pathway components interaction with human genome |
GSE65360 |
Single-cell chromatin accessibility data using scATAC-seq |
GSE65364 |
Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma |
GSE65381 |
HOXB13 ChIP seq in G401 cells |
GSE65423 |
Transcriptomic characterization of a mixed population of pluripotent stem cell derived cerebellar neuron-like progenitors |
GSE65469 |
RNA-seq and Microarray in Transcriptome Profiling of Anterior Cruciate Ligament Tears: Implications for Prognostic Biomarkers Discovery |
GSE65473 |
Physical and functional CSL-p53 interactions underlie control of cancer stromal cell evolution [RNA-seq] |
GSE65474 |
Physical and functional CSL-p53 interactions underlie control of cancer stromal cell evolution |
GSE65507 |
Pluripotent cell models of Fanconi anemia identify the early pathological defect in human hemoangiogenic progenitors |
GSE65508 |
Modeling the early phenotype at the neuromuscular junction of spinal muscular atrophy using patient-derived iPSCs (RNA-Seq) |
GSE65516 |
A microfluidic device for epigenomic profiling using 100 cells |
GSE65518 |
Dynamic regulation of the histone variant H1.0 contributes to intratumor epigenetic and functional heterogeneity [RNA-Seq] |
GSE65520 |
Dynamic regulation of the histone variant H1.0 contributes to intratumor epigenetic and functional heterogeneity |
GSE65525 |
Droplet barcoding for single cell transcriptomics applied to embryonic stem cells |
GSE65664 |
Genetic predisposition to neuroblastoma mediated by a single nucleotide polymorphism within a LMO1 oncogene super-enhancer element |
GSE65683 |
Sperm RNA: A window to idiopathic infertile couples |
GSE65726 |
Complete Haplotype Phasing of the MHC and KIR Loci with Targeted HaploSeq |
GSE65761 |
Correction of human phospholamban R14del mutation associated with cardiomyopathy using targeted nucleases and combination therapy [RNA-Seq] |
GSE65762 |
Correction of human phospholamban R14del mutation associated with cardiomyopathy using targeted nucleases and combination therapy [Exome-Seq] |
GSE65763 |
Correction of human phospholamban R14del mutation associated with cardiomyopathy using targeted nucleases and combination therapy |
GSE65830 |
En bloc and segmental deletions of human XIST reveal X chromosome inactivation-involving RNA elements |
GSE65838 |
Dnmt3a and Dnmt3b associate with enhancers to regulate human epidermal stem cell homeostasis |
GSE65926 |
Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed |
GSE65937 |
ChIP-Seq analysis to identify direct binding of ZNF165 |
GSE65991 |
Transcriptomic analysis of cultured corneal endothelial cells as a validation for their use in cell-replacement therapy |
GSE66019 |
TSA-Seq Mapping of Nuclear Genome Organization |
GSE66023 |
Histone H3 globular domain acetylation identifies new class of enhancers |
GSE66053 |
Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms |
GSE66081 |
Widespread association between YAP/TAZ/TEAD and AP-1 at enhancers drives oncogenic growth [ChIP-Seq] |
GSE66083 |
Widespread association between YAP/TAZ/TEAD and AP-1 at enhancers drives oncogenic growth |
GSE66169 |
The linker histone H1.0 generates epigenetic and functional intratumor heterogeneity |
GSE66173 |
Genetic disruption of COX-1 inhibits multiple oncogenic pathways |
GSE66192 |
A study of the effect of OxLDL on C/EBP beta binding in human macrophages using chromatin immunoprecipitation for C/EBP beta with high throughput sequencing (ChIP-seq) |
GSE66207 |
mRNA and small RNA associated with Crohn's disease behavior [RNA-Seq] |
GSE66208 |
mRNA and small RNA associated with Crohn's disease behavior [ncRNA-Seq] |
GSE66209 |
mRNA and small RNA associated with Crohn's disease behavior |
GSE66261 |
Expression and functions of long noncoding RNAs during human T helper cell differentiation |
GSE66285 |
BLUEPRINT methylome of the HapMap cell line GM18507 (Coriell cell line NA18507) |
GSE66301 |
Gene expression profiling of patient's DCIS-IDC tandem lesions by RNA sequencing analysis |
GSE66385 |
Allogeneic mature human dendritic cells generate superior alloreactive regulatory T cells in the presence of IL-15 |
GSE66388 |
RNA-seq analysis of add-back rescued TALEN-mediated LATS2 knockout HeLa-S3 cells |
GSE66530 |
ChIP-seq validation of recombinant antibodies to histone post-translational modifications |
GSE66556 |
Mitochondrial phosphoenolpyruvate carboxykinase (PCK2) regulates metabolic adaptation and glucose-independent tumor cell growth |
GSE66573 |
Defective structural RNA processing in relapsing-remitting multiple sclerosis |
GSE66590 |
Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (RNA-seq_RiboZero) |
GSE66592 |
Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (RNA-seq_ClonTech) |
GSE66649 |
Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology |
GSE66719 |
SF3B1 Degron knockdown RNA-seq |
GSE66742 |
Epigenome Editing by a CRISPR/Cas9-Based Acetyltransferase Activates Genes from Promoters and Enhancers |
GSE66755 |
CRISPR Display: A modular method for locus-specific targeting of long noncoding RNAs and synthetic RNA devices in vivo [RNA-Seq] |
GSE66756 |
CRISPR Display: A modular method for locus-specific targeting of long noncoding RNAs and synthetic RNA devices in vivo |
GSE66763 |
Functional Inflammatory Profiles Distinguish Myelin-Reactive T Cells from Patients with Multiple Sclerosis |
GSE66798 |
The acetyllysine reader BRD3R promotes human nuclear reprogramming and regulates mitosis |
GSE66876 |
Pancreatic cancer exosomes induce pre-metastatic niche formation in the liver |
GSE66895 |
Disease-Associated SNPs From non-Coding Regions in Juvenile Idiopathic Arthritis Are Located Within or Adjacent to Functional Genomic Elements of Human Neutrophils and CD4+ T Cells [RNA-Seq] |
GSE66896 |
Disease-Associated SNPs From non-Coding Regions in Juvenile Idiopathic Arthritis Are Located Within or Adjacent to Functional Genomic Elements of Human Neutrophils and CD4+ T Cells [ChIP-Seq] |
GSE66898 |
Disease-Associated SNPs From non-Coding Regions in Juvenile Idiopathic Arthritis Are Located Within or Adjacent to Functional Genomic Elements of Human Neutrophils and CD4+ T Cells |
GSE67141 |
High-throughput sequencing reveals key genes and immune homeostatic pathways activated in myeloid dendritic cells by Porphyromonas gingivalis 381 and its fimbrial mutants |
GSE67184 |
Transcription Profiling of Malaria-Naïve and Semi-Immune Colombian Volunteers in a Plasmodium vivax Sporozoite Challenge [RNA-Seq] |
GSE67250 |
Integration of genome-wide DNA methylome and transcriptome of human intestinal fibroblasts reveals novel candidate gene signatures in Crohn’s disease-associated fibrosis |
GSE67282 |
Establishment of tractable human iPSC-based models for the study and targeting of glioma initiation (ChIP-Seq) |
GSE67286 |
Establishment of human iPSC-based models for the study and targeting of glioma initiating cells |
GSE67314 |
MLL4 (KMT2D) inactivating mutations lead to focal loss of H3K4me1/2 and deregulated gene expression in B cell lymphomas |
GSE67382 |
BAF controls genome accessibility |
GSE67427 |
Mycobacterial infection induces a specific human innate immune response |
GSE67454 |
A simple method for generating high-resolution maps of genome wide protein binding |
GSE67470 |
Transcription Profiling of Malaria-Naïve and Semi-Immune Colombian Volunteers in a Plasmodium vivax Sporozoite Challenge |
GSE67494 |
Identification of KMT2D regulated genes in germinal center B cells |
GSE67621 |
Effect of TET1 overexpression on hydroxymethylcytosine levels of HEK293 cells |
GSE67633 |
Epigenetic determinants of self-renewal in glioblastoma [ATAC-seq] |
GSE67673 |
Genome-wide map of H3K4me3 in HEK293 cells after PRDM9 expression |
GSE67713 |
DLX3 alters transcriptomic profile of adhesion, cell cycle, and cell death in Squamous Cell Carcinoma Cells |
GSE67714 |
DLX3-dependent p53 signaling network controls keratinocyte cell cycle and squamous tumor growth |
GSE67823 |
Master transcription factors in corneal epithelial cells |
GSE67848 |
Characterization of Type I Interferon pathway during Hepatic Differentiation of Human Pluripotent Stem Cells and hepatitis C virus infection |
GSE67867 |
Competition between DNA methylation and transcription factors determines binding of NRF1 |
GSE67931 |
Disruption of Na+/H+ exchanger regulatory factor 2 scaffold suppresses colon cancer proliferation |
GSE67945 |
Investigation about fibroblasts of different origins in culture |
GSE67963 |
Widespread RNA Binding by Chromatin Associated Proteins |
GSE68008 |
Methods comparison for ribosome profiling |
GSE68039 |
Nucleotide stress induction of HEXIM1 suppresses melanoma by modulating cancer cell-specific gene transcription [RNA-Seq1] |
GSE68040 |
Nucleotide stress induction of HEXIM1 suppresses melanoma by modulating cancer cell-specific gene transcription [RNA-Seq2] |
GSE68044 |
Nucleotide stress induction of HEXIM1 suppresses melanoma by modulating cancer cell-specific gene transcription [ChIP-Seq2] |
GSE68047 |
Nucleotide stress induction of HEXIM1 suppresses melanoma by modulating cancer cell-specific gene transcription [reChIP-seq] |
GSE68052 |
Nucleotide stress induction of HEXIM1 suppresses melanoma by modulating cancer cell-specific gene transcription [ChIP-Seq] |
GSE68053 |
Nucleotide stress induction of HEXIM1 suppresses melanoma by modulating cancer cell-specific gene transcription |
GSE68069 |
Master transcription factors in corneal epithelial cells [ATAC-Seq] |
GSE68086 |
RNA-seq of tumor-educated platelets enables blood-based pan-cancer, multiclass and molecular pathway cancer diagnostics |
GSE68109 |
Impact of flanking chromosomal sequences on localization and silencing by the ncRNA XIST |
GSE68189 |
Comprehensive analysis of microRNA expression in the human developing brain reveals microRNA-10 as a caudalizing factor |
GSE68221 |
Histone variant H2A.Z.2 mediates proliferation and drug sensitivity of malignant melanoma [RNA-seq] |
GSE68349 |
ChIPseq analyses in germinal center B cells |
GSE68378 |
Ambient O2 pressure induces NF-kB1/RelA related inflammatory response in human lung epithelial cells in vitro |
GSE68402 |
Mapping of histone modifications in episomal HBV cccDNA uncovers an unusual chromatin conformation amenable to epigenetic manipulation |
GSE68416 |
BMAL1 Activates Clock Gene Expression by Regulating Transcription Initiation |
GSE68452 |
Role of cervicovaginal microbiota in genital inflammation |
GSE68507 |
Cross-species comparison of epigenetic poising in the mammalian germ line |
GSE68596 |
Genome-wide maps of nuclear lamina interactions in single human cells (CEL-seq) |
GSE68645 |
The DAXX co-repressor is directly recruited to active regulatory elements genome-wide to regulate autophagy programs in a model of human prostate cancer (RNA-seq) |
GSE68647 |
The DAXX co-repressor is directly recruited to active regulatory elements genome-wide to regulate autophagy programs in a model of human prostate cancer (ChIP-seq) |
GSE68656 |
The DAXX co-repressor is directly recruited to active regulatory elements genome-wide to regulate autophagy programs in a model of human prostate cancer |
GSE68864 |
ATF4 Licenses C/EBPb Activity in Human Mesenchymal Stem Cells Primed for Adipogenesis |
GSE68872 |
RNA-Seq analysis of Head and Neck Squamous cell carcinoma cell-lines |
GSE68919 |
Tumor exosome integrins determine organotropic metastasis |
GSE68938 |
RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships (RNA-seq) |
GSE68948 |
RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships RDIP-seq) |
GSE68953 |
RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships |
GSE68976 |
Activation of proto-oncogenes by disruption of chromosome neighborhoods [ChIP-Seq] |
GSE68977 |
Activation of proto-oncogenes by disruption of chromosome neighborhoods [chIA-PET] |
GSE68978 |
Activation of proto-oncogenes by disruption of chromosome neighborhoods |
GSE69047 |
Time-Resolved Proteomics Extends Ribosome Profiling-Based Measurements of Protein Synthesis Dynamics |
GSE69092 |
ELAVL2-regulated transcriptional networks in human neurons link atlernative splicing, autism and human neocortical evolution |
GSE69100 |
Reciprocal Regulation between the Circadian Clock and Hypoxic Signaling in Mammals |
GSE69107 |
CDK7-dependent Transcriptional Addiction in Basal-like Breast Cancer |
GSE69291 |
H3K36 mutations promote sarcomagenesis through genome-wide remodeling of H3K36 and H3K27 methylation |
GSE69292 |
Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency [smartseq2] |
GSE69312 |
Genome-wide maps of human OEC innate immune responses to Burkholderia |
GSE69351 |
Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency [SCRB-Seq] |
GSE69352 |
Tunable protein synthesis by transcript isoforms in human cells (Transcript Isoforms in Polysomes sequencing: TrIP-seq) |
GSE69403 |
Interactions of melanoma cells with distal keratinocytes trigger metastasis via Notch signaling inhibition of MITF |
GSE69405 |
Single-cell RNA sequencing of lung adenocarcinoma patient-derived cells |
GSE69434 |
The protein and transcript profiles of human semen |
GSE69439 |
Regulatory landscape fusion in rhabdomyosarcoma by interactions between the PAX3 promoter and FOXO1 regulatory elements |
GSE69476 |
mRNA sequencing of the global effect of SOX2 on gene expression in hESC and hESC derived NPCs. |
GSE69479 |
Genome-wide map of SOX2 occupancy in human ES cells (hESCs) and hESC derived neural progenitor cells (hNPCs) |
GSE69505 |
Bisulfite sequencing coupled to target enrichment in MCF-7 |
GSE69506 |
Chromatin-associated RNA-seq in MCF-7 |
GSE69507 |
Chromatin-release of the long ncRNA A-ROD is required for transcriptional activation of its target gene DKK1 |
GSE69516 |
EHMT1 and EHMT2 inhibition induce fetal hemoglobin expression [ChIP-seq] |
GSE69529 |
Elucidating the etiology and molecular pathogenicity of infectious diarrhea by high throughput RNA sequencing |
GSE69558 |
Detection of Enhancer-Associated Rearrangements Reveals Mechanisms of Oncogene Dysregulation in B-cell Lymphoma [ChIP-Seq] |
GSE69579 |
Circulating extracellular microRNAs predictive of human liver allograft status. |
GSE69596 |
Gene expression analysis of CD4+ and CD4- ILC1 subsets by RNAseq |
GSE69597 |
Refining brucellosis diagnosis by blood transcriptional profiling. |
GSE69600 |
Capture Hi-C reveals novel candidate genes and complex long-range interactions with related autoimmune risk loci |
GSE69602 |
Ribosome profiling analysis of Dengue Virus |
GSE69618 |
An orthologous epigenetic gene expression signature derived from differentiating embryonic stem cells identifies regulators of cardiogenesis |
GSE69637 |
RNA-seq identifies novel lncRNAs involved in vascular smooth muscle cell proliferation |
GSE69656 |
An Alternative Splicing Event Amplifies Evolutionary Differences Between Vertebrates |
GSE69667 |
A systematic analysis of the time series gene expression in TGF-beta induced EMT by Next-generation sequencing |
GSE69706 |
Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules |
GSE69735 |
Recurrent alterations of TNFAIP3 (A20) in T-cell large granular lymphocytic leukemia |
GSE69738 |
Gene body H2B1ub regulates RNA Polymerase II pause release and is not needed for transcription elongation |
GSE69739 |
Genome-wide binding profiles of an artificial zinc finger protein with or without a KLF3 functional domain |
GSE69822 |
Perturbations of PIP3 signaling trigger a global remodeling of mRNA landscape and reveal a transcriptional feedback loop |
GSE69825 |
Biomarker discovery: Quantification of microRNAs and other small non-coding RNAs using next generation sequencing |
GSE69839 |
CENP-T and CENP-C bridge adjacent CENP-A nucleosomes on young alpha-satellite dimers |
GSE69921 |
Ribosome profiling of control and leucine-starved SUM159 cells |
GSE69922 |
Ribosome profiling of MCF10A cells treated with TGFb and esterified leucine |
GSE69932 |
Comparison of the transcriptome and chromatin state between human cord blood HSC and human iPSC derived hematopoietic progenitor using next-generation sequencing |
GSE69977 |
Fine-mapping of DNA modifications in the lactase gene region of humans and mice |
GSE69979 |
Epigenetics of lactose intolerance and lactase persistence |
GSE70038 |
Genome-wide CRISPR-Cas9 screens reveal loss of redundancy between PKMYT1 and WEE1 in Glioblastoma stem-like cells |
GSE70050 |
Lack of allergy to timothy grass pollen is not a passive phenomenon but associated with allergen specific modulation of immune reactivity |
GSE70106 |
The role of antigen presenting cells in the induction of HIV-1 latency in resting CD4+ T-cells |
GSE70267 |
COSMIC-seq of bioactive N-methylpyrrole/N-methylimidazole polyamides |
GSE70268 |
RNA-seq of cytosolic and chromatin-associated transcripts following TNFα and Spt5 KD |
GSE70275 |
Transcriptional repression of IRF7 by MYC is critical for antiviral immune response in human pDC [ChIP-seq] |
GSE70278 |
Transcriptional repression of IRF7 by MYC is critical for antiviral immune response in human pDC |
GSE70285 |
Measure transcript integrity using RNA-seq data |
GSE70299 |
The evolution of N6-methyladenosine in primates |
GSE70404 |
Investigation about Monocytes in metastatic breast cancer patients under chemotherapy +/- Avastin |
GSE70424 |
UTRseq_human_brain |
GSE70447 |
BRD4 loading at the transcription start site mediates pause-release and underlies the disproportionate transcriptional response to BET bromodomain inhibition [RNA-Seq] |
GSE70448 |
BRD4 loading at the transcription start site mediates pause-release and underlies the disproportionate transcriptional response to BET bromodomain inhibition [ChIP-Seq] |
GSE70449 |
BRD4 loading at the transcription start site mediates pause-release and underlies the disproportionate transcriptional response to BET bromodomain inhibition [GRO-Seq] |
GSE70450 |
BRD4 loading at the transcription start site mediates pause-release and underlies the disproportionate transcriptional response to BET bromodomain inhibition |
GSE70462 |
Identifying DEK-dependent transcriptional signatures in HPV+ and HPV- head and neck squamous cell carcinoma (HNSCC) |
GSE70466 |
Replicated transcriptome profiling of Normal and Cancerous Prostate Cells [RNA-Seq] |
GSE70482 |
ChIPmentation: fast, cheap, low-input ChIP-seq for histones and transcription factors |
GSE70551 |
Gene expression changes by exogenous expression of epithelial-to-mesenchymal (EMT)-inducing transcription factors (Snail and Zeb1) and mesenchymal-to-epithelial transition (MET)-inducing transcription factor (Ovol2) in MCF10A cells |
GSE70621 |
Analysis of paired primary and metastatic cell lines identifies common DNA methylation changes in melanoma metastasis. |
GSE70624 |
Role of the histone demethylase KDM2B in hematopoietic homeostasis and malignancies [ChIP-seq] |
GSE70660 |
Dynamic control of enhancer repertoires drives lineage and developmental stage-specific transcription during human erythropoiesis |
GSE70671 |
Epigenome Editing by CRISPR/Cas9 Repressors for Silencing of Distal Regulatory Elements |
GSE70686 |
ChIP-seq of circadian transcription factors in MLL-AF9 leukemia cell lines |
GSE70729 |
Role of the histone demethylase KDM2B in hematopoietic homeostasis and malignancies |
GSE70785 |
Differentially Expressed Pseudogenes in HIV-1 Infection |
GSE70801 |
Profile of RNAs bound by wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [iCLIP-Seq] |
GSE70802 |
Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq] |
GSE70803 |
Total RNA profiles associated with DDX3 wild-type (WT) or R534H variant expression with or without sodium arsenite treatment [RNA-seq] |
GSE70804 |
Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment |
GSE70823 |
Mapping open chromatin dynamics of cortical neuron differentiation from human induced pluripotent stem cells (iPSCs) by ATAC-Seq |
GSE70833 |
HCT116 MYC 3' TBE1 (WT) and KO RNA-Seq |
GSE70868 |
The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains |
GSE70869 |
Chip-seq BRD4NUT-BioTAP mapping in 293Trex and 797 cells |
GSE70870 |
Chip-seq mapping of active chromatin marks in BRD4-NUT and different NMC cells |
GSE70871 |
Recovery and analysis of nascent RNA |
GSE70874 |
Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival [RNA-Seq] |
GSE70875 |
Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival |
GSE70909 |
The impact of oil spill to lung health – insights from an RNA-seq study of human airway epithelial cells |
GSE70920 |
The chromatin remodeler ATRX binds to atypical chromatin domains at the 3’ exons of ZNF genes to preserve H3K9me3 enrichment |
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