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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 03, 2009 |
| Title |
Illumina HumanWG6_V2 chip |
| Technology type |
oligonucleotide beads |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Illumina Inc. |
| Manufacture protocol |
see manufacturer's website
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| Description |
This platform lets you assay more than 46,000 transcripts and profile six samples simultaneously on a single HumanWG-6 BeadChip.
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| Contributor(s) |
Gao Z |
| Submission date |
Feb 27, 2009 |
| Last update date |
Jan 18, 2013 |
| Contact name |
Gao Zhang |
| E-mail(s) |
[email protected]
|
| Phone |
215-898-3951
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| Organization name |
Wistar Institute
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| Department |
Molecular and Cellular Oncogenesis Program
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| Lab |
Dr.Meenhard Herlyn's Lab
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| Street address |
3601 SPRUCE ST
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| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
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| Samples (69)
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GSM375675, GSM375676, GSM375677, GSM375678, GSM1155434, GSM1155435
GSM1155436, GSM1155437, GSM1155438, GSM1155439, GSM1155440, GSM1155441, GSM1155442, GSM1155443, GSM1155444, GSM2436998, GSM2436999, GSM2437000, GSM2437001, GSM2437002, GSM2437003, GSM2437004, GSM2437005, GSM2437006, GSM2437007, GSM2437008, GSM2437009, GSM2437010, GSM2437011, GSM2437012, GSM2437013, GSM2437014, GSM2437015, GSM2437016, GSM2437017, GSM2437018, GSM2437019, GSM2437020, GSM2437021, GSM2437022, GSM2437023, GSM2437024, GSM2437025, GSM2437026, GSM2437027, GSM2437028, GSM2437029, GSM2437030, GSM2437031, GSM2437032, GSM2437033, GSM2437034, GSM2437035, GSM2437036, GSM2437037, GSM2437038, GSM2437039, GSM2437040, GSM4151792, GSM4151793, GSM4151794, GSM4151795, GSM4151796, GSM4151797, GSM4151798, GSM4151799, GSM4151800, GSM4151801, GSM4151802
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| Series (5)
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| GSE15040 |
Expression data from human neonatal melanocytes and Notch transformed human neonatal melanocytes |
| GSE47726 |
Genome-wide transcriptional analysis of synovial tissue gene expression associated with the response to anti-TNF therapy in Rheumatoid Arthritis |
| GSE92763 |
LPAR signaling activated in neural crest stem cells promotes melanoma cell growth, invasion and therapy resistance [HumanWG6_V2] |
| GSE92765 |
LPAR signaling activated in neural crest stem cells promotes melanoma cell growth, invasion and therapy resistance |
| GSE140036 |
Microarray analysis of the synovial membrane of rheumatoid arthritis patients undergoing anti-TNF therapy |
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| Data table header descriptions |
| ID |
Illumina ID |
| SYMBOL |
Gene Symbol |
| DEFINITION |
Gene Description |
| TARGET |
Illumina Target ID |
| PROBEID |
Illumina Probe ID |
| GID |
Illumina GID |
| TRANSCRIPT |
Illumina Transcript Description |
| GB_ACC |
Genbank accession number |
| TYPE |
Type |
| START |
Start |
| SEQUENCE |
Probe Sequence |
| ONTOLOGY |
Ontology ID |
| SYNONYM |
Synonym |
| Data table |
| ID |
SYMBOL |
DEFINITION |
TARGET |
PROBEID |
GID |
TRANSCRIPT |
GB_ACC |
TYPE |
START |
SEQUENCE |
ONTOLOGY |
SYNONYM |
| ILMN_10000 |
THBS3 |
Homo sapiens thrombospondin 3 (THBS3), mRNA. |
ILMN_10000 |
6960451 |
40317629 |
NM_007112.3 |
NM_007112.3 |
S |
3074 |
CAAGGGGTATTACTCAGGCACTAACCCCAGGAAAGATGACAGCACATTGC |
cell-matrix adhesion [goid 7160] [pmid 8468055] [evidence TAS]; cell motility [goid 6928] [evidence NR ]; calcium ion binding [goid 5509] [pmid 8288588] [evidence TAS]; structural molecule activity [goid 5198] [evidence IEA]; protein binding [goid 5515] [evidence IEA]; heparin binding [goid 8201] [evidence NR ]; extracellular matrix (sensu Metazoa) [goid 5578] [evidence NR ] |
TSP3 |
| ILMN_100000 |
|
DKFZp564O0672_s1 564 (synonym: hfbr2) Homo sapiens cDNA clone DKFZp564O0672 3, mRNA sequence |
ILMN_100000 |
2850504 |
5928269 |
Hs.521821 |
AL037696 |
S |
364 |
CACCCCAGCACGTTCACCCTGGACCACAAAAACTGGAAAGGAAGAGGGTC |
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| ILMN_100007 |
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xj89a11.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:2664380 3, mRNA sequence |
ILMN_100007 |
7560397 |
6452397 |
Hs.521857 |
AW183883 |
S |
90 |
TGCCAAGCTGTTTCCGCTGAGGACAGAAGGCATTGGTCTCCCCTGCAGGA |
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| ILMN_100009 |
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UI-E-EO1-ajb-b-02-0-UI.s1 UI-E-EO1 Homo sapiens cDNA clone UI-E-EO1-ajb-b-02-0-UI 3, mRNA sequence |
ILMN_100009 |
5360747 |
23690036 |
Hs.521879 |
BU742987 |
S |
284 |
GTCATGCACTGTCCGAAGCATTTACTCCTCCCAACAACCCTGTGAGGTCG |
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| ILMN_10001 |
SLC38A2 |
Homo sapiens solute carrier family 38, member 2 (SLC38A2), mRNA. |
ILMN_10001 |
2600731 |
31543637 |
NM_018976.3 |
NM_018976.3 |
S |
4672 |
GTTAGAGGCCAACAATTCTAGTATGGCTTGTTGGCAAAGAGTGCTACACC |
transport [goid 6810] [evidence IEA]; amino acid transport [goid 6865] [evidence IEA]; amino acid-polyamine transporter activity [goid 5279] [evidence IEA]; membrane [goid 16020] [evidence IEA] |
ATA2; SAT2; SNAT2; PRO1068; KIAA1382 |
| ILMN_100010 |
|
603072393F1 NIH_MGC_119 Homo sapiens cDNA clone IMAGE:5164510 5, mRNA sequence |
ILMN_100010 |
3990110 |
15937005 |
Hs.521893 |
BI825455 |
S |
565 |
CCACCACGAGGGGCGGCAAGGACAGGATCAGCCCACTTTGTGAATGAAGA |
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|
| ILMN_10002 |
XG |
Homo sapiens Xg blood group (XG), mRNA. |
ILMN_10002 |
2120309 |
28212219 |
NM_175569.1 |
NM_175569.1 |
S |
1860 |
CTTCAAAGAGAGAAGGTTGAAAGTGGAAAGCACTTGAAAGGGCTCCCCGG |
biological process unknown [goid 4] [evidence ND ]; molecular function unknown [goid 5554] [pmid 8054981] [evidence ND ]; membrane [goid 16020] [evidence NAS]; integral to membrane [goid 16021] [evidence IEA] |
PBDX; MGC118758; MGC118759; MGC118760; MGC118761 |
| ILMN_100028 |
|
EST29662 Cerebellum II Homo sapiens cDNA 5 end, mRNA sequence |
ILMN_100028 |
6420474 |
1978722 |
Hs.521975 |
AA326446 |
S |
273 |
GTGAACAGTACGTGGCTCTGGAGTCTGCCTTAATGAACCTTGGGGGCGGG |
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| ILMN_100030 |
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RST42326 Athersys RAGE Library Homo sapiens cDNA, mRNA sequence |
ILMN_100030 |
670095 |
13748427 |
Hs.522002 |
BG459921 |
S |
236 |
GGTGAGTATGAAGCTTATACTGTCTGGAGGCAATCGTGACAGATGAGTGA |
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| ILMN_100031 |
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wa82e06.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:2302690 3 similar to contains element MER37 repetitive element ;, mRNA sequence |
ILMN_100031 |
130367 |
4895773 |
Hs.522004 |
AI684479 |
S |
252 |
AGGAGCCATCCAAAGCTAAAGCCAACACTGGTCACCTTGTGGAATGGGGC |
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| ILMN_100034 |
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K-EST0058554 S13KMS5s1 Homo sapiens cDNA clone S13KMS5s1-7-G08 5, mRNA sequence |
ILMN_100034 |
3830242 |
19939279 |
Hs.522036 |
BQ082119 |
S |
115 |
TGTTCACGGGATCACCACATTGACGATTCAGCCCAGTTATCTGGCAGTGC |
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| ILMN_100037 |
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AGENCOURT_14012124 NIH_MGC_186 Homo sapiens cDNA clone IMAGE:30373218 5, mRNA sequence |
ILMN_100037 |
6480041 |
30757580 |
Hs.522056 |
CD104406 |
S |
751 |
GAGCGTGTCCACCGACTTCTATTCCCGCTGCGCTCCATCAGAAAAGCTCC |
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| ILMN_10004 |
DDR1 |
Homo sapiens discoidin domain receptor family, member 1 (DDR1), transcript variant 2, mRNA. |
ILMN_10004 |
7510608 |
38327631 |
NM_001954.3 |
NM_001954.3 |
S |
3474 |
TTGGGCTTCTTCCTCCTCCATCACCTGAAACACTGGACCTGGGGGTAGCC |
cell adhesion [goid 7155] [pmid 8302582] [evidence TAS]; transmembrane receptor protein tyrosine kinase signaling pathway [goid 7169] [evidence IEA]; protein amino acid phosphorylation [goid 6468] [evidence IEA]; nucleotide binding [goid 166] [evidence IEA]; transmembrane receptor protein tyrosine kinase activity [goid 4714] [pmid 9659899] [evidence TAS]; receptor activity [goid 4872] [evidence IEA]; transferase activity [goid 16740] [evidence IEA]; ATP binding [goid 5524] [evidence IEA]; protein-tyrosine kinase activity [goid 4713] [evidence IEA]; membrane [goid 16020] [evidence IEA]; integral to plasma membrane [goid 5887] [pmid 8390675] [evidence TAS] |
CAK; DDR; NEP; PTK3; RTK6; TRKE; CD167; EDDR1; MCK10; NTRK4; PTK3A |
| ILMN_10005 |
CCNB1 |
Homo sapiens cyclin B1 (CCNB1), mRNA. |
ILMN_10005 |
1570494 |
34304372 |
NM_031966.2 |
NM_031966.2 |
S |
1811 |
ACTTCCATAGGACATACTGCATGTAAGCCAAGTCATGGAGAATCTGCTGC |
cell division [goid 51301] [evidence IEA]; mitosis [goid 7067] [evidence IEA]; regulation of cell cycle [goid 74] [evidence IEA]; G2/M transition of mitotic cell cycle [goid 86] [evidence NAS]; cell cycle [goid 7049] [evidence IEA]; protein binding [goid 5515] [pmid 10373560] [evidence IPI]; nucleus [goid 5634] [evidence IEA] |
CCNB |
| ILMN_100054 |
|
CR739603 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGp971F23105 ; IMAGE:1327077 3, mRNA sequence |
ILMN_100054 |
1740092 |
51664217 |
Hs.522117 |
CR739603 |
S |
255 |
AGGTCCAAGAACTCTGCTTTGAAGTTCAGGATCTAGGTTACCAGAGCTAG |
|
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| ILMN_100059 |
|
xd84f10.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:2604331 3, mRNA sequence |
ILMN_100059 |
3440520 |
6085802 |
Hs.522139 |
AW117218 |
S |
210 |
TTGATATGGATGGGAGCTGGGGCTGGAAAGTCACCCCCTTCCAAGGCCTG |
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| ILMN_10006 |
ZNF496 |
Homo sapiens zinc finger protein 496 (ZNF496), mRNA. |
ILMN_10006 |
6520451 |
14249385 |
NM_032752.1 |
NM_032752.1 |
S |
2288 |
ATCAGCGCCCCCACCCAGGACATACCTTCCCCAGGATAGAGAGCACACCT |
regulation of transcription, DNA-dependent [goid 6355] [evidence IEA]; transcription [goid 6350] [evidence IEA]; metal ion binding [goid 46872] [evidence IEA]; nucleic acid binding [goid 3676] [evidence IEA]; zinc ion binding [goid 8270] [evidence IEA]; protein binding [goid 5515] [pmid 16189514] [evidence IPI]; transcription factor activity [goid 3700] [evidence IEA]; nucleus [goid 5634] [evidence IEA] |
NIZP1; MGC15548 |
| ILMN_100075 |
|
Homo sapiens cDNA FLJ37325 fis, clone BRAMY2018295 |
ILMN_100075 |
780746 |
21753745 |
Hs.522202 |
AK094644 |
S |
1583 |
CCTCACTCTTCCAAATCCCTAATGGCGGCACCCTAacagacacataccac |
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| ILMN_100079 |
|
Homo sapiens cDNA FLJ41123 fis, clone BRACE2014657 |
ILMN_100079 |
150546 |
34528586 |
Hs.522234 |
AK123118 |
S |
1631 |
GTGGGCGCCACGTCGCACTCTCTGGGTATGTCTCAAGGTGTGGATAATGC |
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| ILMN_100083 |
|
ak44f08.s1 Soares_testis_NHT Homo sapiens cDNA clone IMAGE:1408839 3, mRNA sequence |
ILMN_100083 |
2640192 |
2954051 |
Hs.522263 |
AA861911 |
S |
226 |
AGGCAAATGAGAATGGTCTTGACTGTTATGCAGAGGACCAGGATCCTGGG |
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Total number of rows: 46713
Table truncated, full table size 15332 Kbytes.
| Supplementary data files not provided |
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