|
| Status |
Public on Jul 26, 2019 |
| Title |
antiTNF_Responder_2 |
| Sample type |
RNA |
| |
|
| Source name |
antiTNF_Responder_2
|
| Organism |
Homo sapiens |
| Characteristics |
disease: Rheumatoid Arthritis fulfilling ACR diagnostic criteria
gender: female
age: 64
anti-tnf response 20 weeks: European League Against Rheumatoid Arthritis (EULAR) responder
|
| Treatment protocol |
Immediately after arthroscopy biopsy, samples were kept in RNALater preservation agent and stored at -80ºC until extraction.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using Quiagen Mini Kit Protocol in accordance with the described protocol. Dnase I treatment was used to remove genomic DNA traces.
|
| Label |
biotin
|
| Label protocol |
Standard Illumina hybridization protocol
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina hybridization protocol
|
| Description |
SAMPLE2
|
| Data processing |
The data were log2 transformed and quantile normalized using R Bioconductor. Only microarray probes matching curated gene sequences from NCBI RefSeq database (release 51) were selected. A final number of 21,189 curated probes representing the expression of 18,524 different human genes were finally selected for analysis.
|
| |
|
| Submission date |
Jun 07, 2013 |
| Last update date |
Jul 26, 2019 |
| Contact name |
Antonio Julià |
| E-mail(s) |
[email protected]
|
| Phone |
+34 934029082
|
| Organization name |
Vall d'Hebron Hospital Research Institute
|
| Department |
Rheumatology Research Group
|
| Lab |
Rheumatology Research Group
|
| Street address |
c/ Baldiri Reixac nº15
|
| City |
Barcelona |
| State/province |
Barcelona |
| ZIP/Postal code |
08028 |
| Country |
Spain |
| |
|
| Platform ID |
GPL8234 |
| Series (1) |
| GSE47726 |
Genome-wide transcriptional analysis of synovial tissue gene expression associated with the response to anti-TNF therapy in Rheumatoid Arthritis |
|
