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Status
Public on Nov 09, 2006
Title
Agilent-014584 Human Genome 244K CGH Microarray (Alpha Test)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Alpha test array -- final design is Agilent-014693, P/N G4411B.
Submission date
Nov 09, 2006
Last update date
Feb 08, 2008
Organization
Agilent Technologies
E-mail(s)
[email protected] Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (138)
GSM147888 , GSM147957 , GSM269798 , GSM269799 , GSM336410 , GSM336412
GSM562392 ,
GSM562393 ,
GSM562394 ,
GSM562395 ,
GSM562396 ,
GSM562397 ,
GSM562398 ,
GSM562399 ,
GSM562400 ,
GSM562401 ,
GSM562402 ,
GSM562403 ,
GSM562404 ,
GSM562405 ,
GSM562406 ,
GSM562407 ,
GSM562408 ,
GSM562409 ,
GSM562410 ,
GSM562411 ,
GSM562412 ,
GSM562413 ,
GSM562414 ,
GSM562415 ,
GSM562416 ,
GSM562417 ,
GSM562418 ,
GSM562419 ,
GSM562420 ,
GSM562421 ,
GSM562422 ,
GSM562423 ,
GSM562424 ,
GSM562425 ,
GSM562426 ,
GSM562427 ,
GSM562428 ,
GSM562429 ,
GSM562430 ,
GSM562431 ,
GSM562432 ,
GSM562433 ,
GSM562434 ,
GSM562435 ,
GSM562436 ,
GSM562437 ,
GSM562438 ,
GSM562439 ,
GSM562440 ,
GSM562441 ,
GSM562442 ,
GSM562443 ,
GSM562444 ,
GSM562445 ,
GSM562446 ,
GSM562447 ,
GSM562448 ,
GSM562449 ,
GSM562450 ,
GSM562451 ,
GSM562452 ,
GSM562453 ,
GSM562454 ,
GSM562455 ,
GSM562456 ,
GSM562457 ,
GSM562458 ,
GSM562459 ,
GSM562460 ,
GSM562461 ,
GSM562462 ,
GSM562463 ,
GSM562464 ,
GSM562465 ,
GSM562466 ,
GSM562467 ,
GSM562468 ,
GSM562470 ,
GSM562471 ,
GSM562472 ,
GSM562473 ,
GSM562474 ,
GSM562475 ,
GSM562476 ,
GSM562477 ,
GSM562478 ,
GSM562479 ,
GSM562480 ,
GSM562481 ,
GSM562482 ,
GSM562483 ,
GSM562484 ,
GSM562485 ,
GSM562486 ,
GSM562487 ,
GSM562488 ,
GSM562489 ,
GSM562490 ,
GSM562491 ,
GSM562492 ,
GSM562493 ,
GSM562494 ,
GSM562495 ,
GSM562496 ,
GSM562497 ,
GSM562498 ,
GSM562499 ,
GSM562500 ,
GSM562501 ,
GSM562502 ,
GSM562503 ,
GSM562504 ,
GSM562505 ,
GSM562506 ,
GSM562507 ,
GSM562508 ,
GSM562509 ,
GSM562510 ,
GSM562511 ,
GSM562512 ,
GSM562513 ,
GSM562514 ,
GSM562515 ,
GSM562516 ,
GSM562517 ,
GSM562518 ,
GSM562519 ,
GSM562520 ,
GSM562521 ,
GSM562522 ,
GSM562523 ,
GSM562524 Series (4)
GSE6415 Resolving the resolution of array CGH
GSE10668 The Complete Genome of a Single Individual by Massively Parallel DNA Sequencing
GSE13331 Prognostic analysis of mantle cell lymphoma genomes
GSE22694 Copy number profiling of gastric cancer cell lines and gastric tumor tissues
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location based on genome build NCBI 35
CYTOBAND Cytoband
DESCRIPTION Description
Data table ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION 1
267
912
HsCGHBrightCorner
pos
2
267
910
DarkCorner
pos
3
267
908
DarkCorner
pos
4
267
906
A_16_P01287115
FALSE
NM_173665 MGC34713
hypothetical protein MGC34713
ref|NM_173665
chr5:093930236-093930295
hs|q15
Homo sapiens hypothetical protein MGC34713 (MGC34713), mRNA.
5
267
904
A_16_P03754683
FALSE
NM_007231 SLC6A14
solute carrier family 6 (amino acid transporter), member 14
ref|NM_007231
chrX:115400646-115400705
hs|q23
Homo sapiens solute carrier family 6 (amino acid transporter), member 14 (SLC6A14), mRNA.
6
267
902
A_16_P01832679
FALSE
BC025670 gb|BC025670
chr7:147594175-147594234
hs|q36.1
Homo sapiens, clone IMAGE:5202535, mRNA.
7
267
900
A_16_P02505971
FALSE
chr11:100978949-100979008
hs|q22.1
8
267
898
A_16_P02474555
FALSE
NM_001007027 ALG8
asparagine-linked glycosylation 8 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase)
ref|NM_001007027|ref|NM_024079
chr11:077509836-077509895
hs|q14.1
Homo sapiens asparagine-linked glycosylation 8 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase) (ALG8), transcript variant 2, mRNA.
9
267
896
A_16_P00629303
FALSE
chr2:240206215-240206274
hs|q37.3
10
267
894
A_16_P37853174
FALSE
NM_033071 SYNE1
spectrin repeat containing, nuclear envelope 1
ref|NM_033071|ref|NM_182961
chr6:152778267-152778326
hs|q25.2
Homo sapiens spectrin repeat containing, nuclear envelope 1 (SYNE1), transcript variant longer, mRNA.
11
267
892
A_16_P20017828
FALSE
chr14:039524627-039524686
hs|q21.1
12
267
890
A_16_P02535437
FALSE
BC089451 gb|BC089451
chr11:121405089-121405148
hs|q24.1
Homo sapiens cDNA clone IMAGE:30554612.
13
267
888
A_16_P20581683
FALSE
NM_004822 NTN1
netrin 1
ref|NM_004822
chr17:008872801-008872860
hs|p13.1
Homo sapiens netrin 1 (NTN1), mRNA.
14
267
886
A_16_P20955052
FALSE
NM_175883 OR7D2
olfactory receptor, family 7, subfamily D, member 2
ref|NM_175883
chr19:009160243-009160302
hs|p13.2
Homo sapiens olfactory receptor, family 7, subfamily D, member 2 (OR7D2), mRNA.
15
267
884
A_14_P128555
FALSE
NM_001008392 CTDSPL
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
ref|NM_001008392|ref|NM_005808
chr3:037953375-037953434
hs|p22.3
Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like (CTDSPL), transcript variant 1, mRNA.
16
267
882
A_16_P00162593
FALSE
chr1:147304779-147304838
hs|q21.2
17
267
880
A_16_P36838820
FALSE
NM_174952 MGC46496
hypothetical protein MGC46496
ref|NM_174952
chr4:099380077-099380136
hs|q23
Homo sapiens hypothetical protein MGC46496 (MGC46496), mRNA.
18
267
878
A_16_P20899818
FALSE
chr18:062442687-062442746
hs|q22.1
19
267
876
A_16_P02637370
FALSE
chr12:063382272-063382331
hs|q14.2
20
267
874
A_16_P19368380
FALSE
chr11:109845424-109845483
hs|q22.3
243504 38064 Kbytes .Supplementary data files not provided
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