GEO help: Mouse over screen elements for information.
Status
Public on Dec 02, 2016
Title
Agilent-074036 SurePrint G3 Rat GE v2 8x60K Microarray G4858A (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Rattus norvegicus Manufacturer
Agilent Technologies
Manufacture protocol
See manufacturer's web site at http://www.agilent.com/
Description
Catalog gene expression microarray for Rat, v2 8x60K.
Submission date
Dec 02, 2016
Last update date
Dec 02, 2016
Contact name
GEO admin
E-mail(s)
[email protected] Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (873)
GSM2414838 , GSM2414839 , GSM2414840 , GSM2414841 , GSM2414842 , GSM2414843
GSM2414844 ,
GSM2414845 ,
GSM2414846 ,
GSM2414847 ,
GSM2414848 ,
GSM2414849 ,
GSM3031253 ,
GSM3031254 ,
GSM3031255 ,
GSM3031256 ,
GSM3031257 ,
GSM3031258 ,
GSM3031259 ,
GSM3031260 ,
GSM3031261 ,
GSM3031262 ,
GSM3031263 ,
GSM3031264 ,
GSM3031265 ,
GSM3031266 ,
GSM3031267 ,
GSM3031268 ,
GSM3031269 ,
GSM3031270 ,
GSM3031271 ,
GSM3031272 ,
GSM3031273 ,
GSM3031274 ,
GSM3031275 ,
GSM3031276 ,
GSM3031277 ,
GSM3031278 ,
GSM3031279 ,
GSM3031280 ,
GSM3031281 ,
GSM3031282 ,
GSM3031283 ,
GSM3031284 ,
GSM3031285 ,
GSM3031286 ,
GSM3031287 ,
GSM3031288 ,
GSM3031289 ,
GSM3031290 ,
GSM3031291 ,
GSM3031292 ,
GSM3031293 ,
GSM3031294 ,
GSM3031295 ,
GSM3031296 ,
GSM3031297 ,
GSM3031298 ,
GSM3031299 ,
GSM3031300 ,
GSM3031301 ,
GSM3031302 ,
GSM3031303 ,
GSM3031304 ,
GSM3031305 ,
GSM3031306 ,
GSM3031307 ,
GSM3031308 ,
GSM3031309 ,
GSM3031310 ,
GSM3031311 ,
GSM3031312 ,
GSM3031313 ,
GSM3031314 ,
GSM3031315 ,
GSM3031316 ,
GSM3031317 ,
GSM3031318 ,
GSM3031319 ,
GSM3031320 ,
GSM3031321 ,
GSM3031322 ,
GSM3031323 ,
GSM3031324 ,
GSM3031325 ,
GSM3031326 ,
GSM3031327 ,
GSM3031328 ,
GSM3031329 ,
GSM3031330 ,
GSM3031331 ,
GSM3031332 ,
GSM3031333 ,
GSM3031334 ,
GSM3031335 ,
GSM3031336 ,
GSM3031337 ,
GSM3031338 ,
GSM3031339 ,
GSM3031340 ,
GSM3031341 ,
GSM3031342 ,
GSM3031343 ,
GSM3031344 ,
GSM3031345 ,
GSM3031346 ,
GSM3031347 ,
GSM3031348 ,
GSM3074720 ,
GSM3074721 ,
GSM3108445 ,
GSM3108446 ,
GSM3108447 ,
GSM3108448 ,
GSM3108449 ,
GSM3108450 ,
GSM3108451 ,
GSM3108452 ,
GSM3108453 ,
GSM3108454 ,
GSM3108455 ,
GSM3108456 ,
GSM3108457 ,
GSM3108458 ,
GSM3108459 ,
GSM3108460 ,
GSM3108461 ,
GSM3108462 ,
GSM3108463 ,
GSM3108464 ,
GSM3108465 ,
GSM3108466 ,
GSM3108467 ,
GSM3108468 ,
GSM3108469 ,
GSM3108470 ,
GSM3108471 ,
GSM3108472 ,
GSM3108473 ,
GSM3108474 ,
GSM3108475 ,
GSM3108476 ,
GSM3108477 ,
GSM3108478 ,
GSM3108479 ,
GSM3108480 ,
GSM3108481 ,
GSM3108482 ,
GSM3108483 ,
GSM3108484 ,
GSM3108485 ,
GSM3108486 ,
GSM3108487 ,
GSM3108488 ,
GSM3108489 ,
GSM3108490 ,
GSM3108491 ,
GSM3108492 ,
GSM3108493 ,
GSM3108494 ,
GSM3108495 ,
GSM3108496 ,
GSM3108497 ,
GSM3108498 ,
GSM3108499 ,
GSM3108500 ,
GSM3108501 ,
GSM3108502 ,
GSM3108503 ,
GSM3108504 ,
GSM3108505 ,
GSM3108506 ,
GSM3108507 ,
GSM3108508 ,
GSM3108509 ,
GSM3108510 ,
GSM3108511 ,
GSM3108512 ,
GSM3108513 ,
GSM3108514 ,
GSM3108515 ,
GSM3108516 ,
GSM3108620 ,
GSM3108621 ,
GSM3108622 ,
GSM3108623 ,
GSM3108624 ,
GSM3108625 ,
GSM3108626 ,
GSM3108627 ,
GSM3108628 ,
GSM3108629 ,
GSM3108630 ,
GSM3108631 ,
GSM3108632 ,
GSM3108633 ,
GSM3108634 ,
GSM3108635 ,
GSM3108636 ,
GSM3108637 ,
GSM3108638 ,
GSM3108639 ,
GSM3108640 ,
GSM3108641 ,
GSM3108642 ,
GSM3108643 ,
GSM3108644 ,
GSM3108645 ,
GSM3108646 ,
GSM3108647 ,
GSM3108648 ,
GSM3108649 ,
GSM3108650 ,
GSM3108651 ,
GSM3108652 ,
GSM3108653 ,
GSM3108654 ,
GSM3108655 ,
GSM3108656 ,
GSM3108657 ,
GSM3108658 ,
GSM3108659 ,
GSM3108660 ,
GSM3108661 ,
GSM3108662 ,
GSM3108663 ,
GSM3108664 ,
GSM3108665 ,
GSM3108666 ,
GSM3108667 ,
GSM3108668 ,
GSM3108669 ,
GSM3108670 ,
GSM3108671 ,
GSM3108672 ,
GSM3108673 ,
GSM3108674 ,
GSM3108675 ,
GSM3108676 ,
GSM3108677 ,
GSM3108678 ,
GSM3108679 ,
GSM3108680 ,
GSM3108681 ,
GSM3108682 ,
GSM3108683 ,
GSM3108684 ,
GSM3108685 ,
GSM3108686 ,
GSM3108687 ,
GSM3108688 ,
GSM3108689 ,
GSM3108690 ,
GSM3108691 ,
GSM3499470 ,
GSM3499471 ,
GSM3499472 ,
GSM3499473 ,
GSM3499474 ,
GSM3499475 ,
GSM3499476 ,
GSM3499477 ,
GSM3767806 ,
GSM3767807 ,
GSM3767808 ,
GSM3767809 ,
GSM3767810 ,
GSM3767811 ,
GSM3767812 ,
GSM3767813 ,
GSM3767814 ,
GSM3767815 ,
GSM3767816 ,
GSM3767817 ,
GSM3767818 ,
GSM3767819 ,
GSM3767820 ,
GSM3767821 ,
GSM3767822 ,
GSM3767823 ,
GSM3767824 ,
GSM3862938 ,
GSM3862939 ,
GSM3862940 ,
GSM3862941 ,
GSM3862942 ,
GSM3862943 ,
GSM3862944 ,
GSM3862945 ,
GSM3862946 ,
GSM3862947 ,
GSM3862948 ,
GSM3862949 ,
GSM3862950 ,
GSM3862951 ,
GSM3862952 ,
GSM4077803 ,
GSM4077804 ,
GSM4077805 ,
GSM4077806 ,
GSM4077807 ,
GSM4077808 ,
GSM4077809 ,
GSM4077810 ,
GSM4077811 ,
GSM4077812 ,
GSM4077813 ,
GSM4077814 ,
GSM4077815 ,
GSM4077816 ,
GSM4077817 ,
GSM4077818 ,
GSM4077819 ,
GSM4077820 ,
GSM4145780 ,
GSM4145781 ,
GSM4275736 ,
GSM4275737 ,
GSM4275738 ,
GSM4275739 ,
GSM4339289 ,
GSM4339290 ,
GSM4339291 ,
GSM4339292 ,
GSM4339293 ,
GSM4339294 ,
GSM4339295 ,
GSM4339296 ,
GSM4339297 ,
GSM4339298 ,
GSM4339299 ,
GSM4339300 ,
GSM4339301 ,
GSM4339302 ,
GSM4339303 ,
GSM4339304 ,
GSM4339305 ,
GSM4339306 ,
GSM4339307 ,
GSM4339308 ,
GSM4339309 ,
GSM4339310 ,
GSM4339311 ,
GSM4339312 ,
GSM4339313 ,
GSM4339314 ,
GSM4339315 ,
GSM4339316 ,
GSM4339317 ,
GSM4339318 ,
GSM4339319 ,
GSM4339320 ,
GSM4339321 ,
GSM4365342 ,
GSM4365343 ,
GSM4365344 ,
GSM4365345 ,
GSM4365346 ,
GSM4365347 ,
GSM4365348 ,
GSM4365349 ,
GSM4367845 ,
GSM4367846 ,
GSM4367847 ,
GSM4367848 ,
GSM4367849 ,
GSM4367850 ,
GSM4367851 ,
GSM4367852 ,
GSM4367853 ,
GSM4367854 ,
GSM4367855 ,
GSM4367856 ,
GSM4367857 ,
GSM4367858 ,
GSM4367859 ,
GSM4367860 ,
GSM4367861 ,
GSM4367862 ,
GSM4367863 ,
GSM4367864 ,
GSM4367865 ,
GSM4367866 ,
GSM4367867 ,
GSM4367868 ,
GSM4367869 ,
GSM4367870 ,
GSM4367871 ,
GSM4367872 ,
GSM4367873 ,
GSM4367874 ,
GSM4367875 ,
GSM4367876 ,
GSM4367877 ,
GSM4367878 ,
GSM4367879 ,
GSM4367880 ,
GSM4495551 ,
GSM4495552 ,
GSM4495553 ,
GSM4495554 ,
GSM4495555 ,
GSM4495556 ,
GSM4639972 ,
GSM4639973 ,
GSM4639974 ,
GSM4639975 ,
GSM4639976 ,
GSM4639977 ,
GSM4639978 ,
GSM4639979 ,
GSM4731570 ,
GSM4731571 ,
GSM4731572 ,
GSM4731573 ,
GSM4731574 ,
GSM4731575 ,
GSM4731576 ,
GSM4731577 ,
GSM4731578 ,
GSM4731579 ,
GSM4731580 ,
GSM4731581 ,
GSM4731582 ,
GSM4731583 ,
GSM4731584 ,
GSM4815588 ,
GSM4815589 ,
GSM4815590 ,
GSM4815591 ,
GSM4815592 ,
GSM4815593 ,
GSM4815594 ,
GSM4815595 ,
GSM4815596 ,
GSM4815597 ,
GSM4815598 ,
GSM4815599 ,
GSM4815600 ,
GSM4815601 ,
GSM4815602 ,
GSM4815603 ,
GSM4815604 ,
GSM4815605 ,
GSM4815606 ,
GSM4815607 ,
GSM4815608 ,
GSM4815609 ,
GSM4815610 ,
GSM4815611 ,
GSM4815612 ,
GSM4815613 ,
GSM4815614 ,
GSM4815615 ,
GSM4815616 ,
GSM4815617 ,
GSM4815618 ,
GSM4815619 ,
GSM4815620 ,
GSM4815621 ,
GSM4815622 ,
GSM4815623 ,
GSM4860096 ,
GSM4860097 ,
GSM4860098 ,
GSM4860099 ,
GSM4860100 ,
GSM4860101 ,
GSM4860102 ,
GSM4860103 ,
GSM4860104 ,
GSM4860105 ,
GSM4860106 ,
GSM4860107 ,
GSM4860108 ,
GSM4860109 ,
GSM4860110 ,
GSM4860111 ,
GSM4860112 ,
GSM4860113 ,
GSM4860114 ,
GSM4860115 ,
GSM4860116 ,
GSM4860117 ,
GSM4860118 ,
GSM4860119 ,
GSM4860120 ,
GSM4860121 ,
GSM4860122 ,
GSM4860123 ,
GSM4860124 ,
GSM4860125 ,
GSM4860126 ,
GSM4860127 ,
GSM4860128 ,
GSM4860129 ,
GSM4860130 ,
GSM4860131 ,
GSM4860132 ,
GSM4860133 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (39)
GSE90833 Plant-derived compounds strigolactone GR24 and pinosylvin modulate gene expression in rat L6 skeletal muscle cells
GSE111452 Chronic Gene Expression after Traumatic Brain Injury
GSE112637 Gene expression profiles of rat hypertrophic zone after treatment of CNP53 or U0126 [CNP53]
GSE112639 Gene expression profiles of rat hypertrophic zone after treatment of CNP53 or U0126
GSE113528 Inhaled multi-walled carbon nanotubes-induced gene expression profile in rat lung (NM-401)
GSE113531 Inhaled multi-walled carbon nanotubes-induced gene expression profile in rat lung (NM-403)
GSE113532 Inhaled multi-walled carbon nanotubes-induced gene expression profile in rat lung
GSE123297 Klf4 overexpression effect on P0 rat retina
GSE131221 Enarodustat, hypoxia-inducible factor stabilizer, counteracts the diabetic renal energy metabolism alterations in streptozotocin-induced diabetic rats
GSE132409 Transcriptome of adult rat hepatocytes with different ploidy statuses
GSE137379 Comparison of the modes of action of p-dialkoxy chlorobenzenes in rat primary hepatocytes
GSE139672 Expression data from IEC6 cells after treatment with Na2S3
GSE143876 Gene expression analysis after miR-125a-3p over-expression in oligodendrocyte precursor cells (OPCs)
GSE145917 Gene expression profiling in dorsolateral prostates of prepubertal and adult Sprague-Dawley rats dosed with Estradiol Benzoate, Estradiol and Testosterone
GSE146098 The effects of low-level Er:YAG laser irradiation on proliferation and calcification of primary osteoblast-like cells isolated from rat calvaria
GSE146180 Er:YAG laser irradiation decreases Sost expressions in bone and osteogenic cell (6h after surgery)
GSE146181 Er:YAG laser irradiation decreases Sost expressions in bone and osteogenic cell (24h after surgery)
GSE146182 Er:YAG laser irradiation decreases Sost expressions in bone and osteogenic cell (72h after surgery)
GSE146183 Er:YAG laser irradiation decreases Sost expressions in bone and osteogenic cell
GSE149285 Transcriptome analysis of mesothelial cells induced by intraperitoneal injections of crocidolite in rats
GSE153304 Gene expression profiling of shRNA transduced rat hippocampal neurons
GSE156442 The validation case study of read-across based on IATA for hepatotoxicity of Naphthalene and its structurally similar analogs
GSE158903 Gene expression modification in lungs of rats exposed to DQ-12 by endotracheal instillation
GSE160117 Gene expression modification in lungs of rats exposed to TiO2 by inhalation
GSE160155 Gene expression modification in lungs of rats exposed to carbon black by inhalation
GSE160175 Gene expression modification in lungs of rats exposed to carbon nanotube by inhalation [Mitsui]
GSE163758 Estradiol-dependent gene expression profile in the amygdala of ovariectomized SHRs
GSE167980 Gene expression signatures for rat liver grafts
GSE183503 Development of Specific Therapy Against Right Ventricular Failure (in vitro analysis)
GSE186659 Comparison of toxicological effects and exposure levels between triclosan and its structurally similar chemicals using in vitro tests for read-across case study
GSE198507 Transcriptome analysis of subacute injured kidney by intraperitoneal injections of Fe-NTA in wildtype and BRCA1+/- rats
GSE202994 Acute stress transiently activates macrophages and chemokines in cervical lymph nodes
GSE203369 Gene expression profile in the rat heart across hear regions [array]
GSE203372 Gene expression profile in the human and rat heart across regions
GSE208409 Gene expression analysis after GPR17 silencing in oligodendrocyte precursor cells (OPCs)
GSE212338 Microarray analysis in vessels from control rats (Wistar-Kyoto rats) and disease model rats (Hypertensive rats)
GSE214574 Gene expression modification in lungs of rats exposed to Mitsui-7 and NM-403 by intratracheal instillation
GSE227714 Microarray analysis of choline-deficient L-amino acid-defined (CDAA) diet-induced NAFLD animal model.
GSE236207 Effects of vortioxetine on cognitive impairment induced in rats by androgen deprivation as a model of prostate cancer treatment
Relations Alternative to
GPL22145
Data table header descriptions ID Agilent Probe Name
GB_ACC GenBank Accession number
ENTREZ_GENE_ID Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UniGene Cluster ID
ENSEMBL_ID Ensembl ID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GO ID
CONTROL_TYPE Control type
SEQUENCE Sequence
SPOT_ID Spot identifier
Data table ID GB_ACC ENTREZ_GENE_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID CONTROL_TYPE SEQUENCE SPOT_ID A_42_P453055
NM_031752 78958 Bcam
basal cell adhesion molecule (Lutheran blood group)
Rn.7003
ENSRNOT00000045574
ref|NM_031752|ens|ENSRNOT00000045574|gb|AB035510|gb|BC072479
chr1:79069491-79069432
rn|1q21
Rattus norvegicus basal cell adhesion molecule (Lutheran blood group) (Bcam), mRNA [NM_031752]
GO:0005055(laminin receptor activity)|GO:0005886(plasma membrane)|GO:0007155(cell adhesion)|GO:0007160(cell-matrix adhesion)|GO:0008022(protein C-terminus binding)|GO:0009986(cell surface)|GO:0016021(integral to membrane)|GO:0043236(laminin binding)|GO:0070062(extracellular vesicular exosome)
FALSE
TGGCAGTCAGCGTCGGTCTCTTGCTACTCGTAGTCGCTGCTTTCTACTGCATGAGACGCA
A_42_P453131
XM_006242177 117258 Cntn1
contactin 1
Rn.163525
ref|XM_006242177|gb|DV722953|tc|TC608340
chr7:130847092-130847151
rn|7q35
PREDICTED: Rattus norvegicus contactin 1 (Cntn1), transcript variant X1, mRNA [XM_006242177]
GO:0001948(glycoprotein binding)|GO:0005515(protein binding)|GO:0005886(plasma membrane)|GO:0007155(cell adhesion)|GO:0007219(Notch signaling pathway)|GO:0010628(positive regulation of gene expression)|GO:0010765(positive regulation of sodium ion transport)|GO:0010976(positive regulation of neuron projection development)|GO:0021549(cerebellum development)|GO:0030246(carbohydrate binding)|GO:0031175(neuron projection development)|GO:0031225(anchored to membrane)|GO:0043209(myelin sheath)|GO:0045121(membrane raft)|GO:0050731(positive regulation of peptidyl-tyrosine phosphorylation)|GO:0070062(extracellular vesicular exosome)
FALSE
ATGCACAAAGGACTTCCGCTTTTCATTTTCTCATATAATTGTACAGATGTGACTGGGGCC
A_42_P453151
XM_006240422 299246 Ttc8
tetratricopeptide repeat domain 8
Rn.14768
ref|XM_006240422|ref|XM_006240424|ref|XM_006240423|ref|XM_008764762
chr6:123171526-123171585
rn|6q32
PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 8 (Ttc8), transcript variant X1, mRNA [XM_006240422]
GO:0001103(RNA polymerase II repressing transcription factor binding)|GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0005813(centrosome)|GO:0005929(cilium)|GO:0007411(axon guidance)|GO:0007608(sensory perception of smell)|GO:0008150(biological_process)|GO:0016020(membrane)|GO:0021772(olfactory bulb development)|GO:0032391(photoreceptor connecting cilium)|GO:0032880(regulation of protein localization)|GO:0034260(negative regulation of GTPase activity)|GO:0034464(BBSome)|GO:0035058(nonmotile primary cilium assembly)|GO:0035264(multicellular organism growth)|GO:0036064(cilium basal body)|GO:0042384(cilium assembly)|GO:0045444(fat cell differentiation)|GO:0048560(establishment of anatomical structure orientation)|GO:0051492(regulation of stress fiber assembly)|GO:0060219(camera-type eye photoreceptor cell differentiation)|GO:0061326(renal tubule development)
FALSE
GTTTCCAAGGACATGAAATCTCCTCTCACACTGCATGGTTGATGTTTGTATATAGTTGTT
A_42_P453171
NM_001107063 303653 Cdc42ep4
CDC42 effector protein (Rho GTPase binding) 4
Rn.8595
ENSRNOT00000048264
ref|NM_001107063|ens|ENSRNOT00000048264|ref|XM_006247690|ref|XM_006247688
chr10:103366334-103366275
rn|10q32.1
Rattus norvegicus CDC42 effector protein (Rho GTPase binding) 4 (Cdc42ep4), mRNA [NM_001107063]
GO:0005737(cytoplasm)|GO:0005856(cytoskeleton)|GO:0005886(plasma membrane)|GO:0007266(Rho protein signal transduction)|GO:0008360(regulation of cell shape)|GO:0015629(actin cytoskeleton)|GO:0015630(microtubule cytoskeleton)|GO:0017049(GTP-Rho binding)|GO:0030838(positive regulation of actin filament polymerization)|GO:0031274(positive regulation of pseudopodium assembly)
FALSE
TTTTTCTGAAATCTGTTTTGCTCGGCTCCTGTAACTCTACCCAGAACAAGGGTAGAGGCT
A_42_P453566
XM_001079320 304479 Mlxip
MLX interacting protein
Rn.9068
ref|XM_001079320|gb|CV078638|tc|TC582930|gb|BF556525
chr12:34267469-34267410
rn|12q16
PREDICTED: Rattus norvegicus MLX interacting protein (Mlxip), transcript variant X1, mRNA [XM_001079320]
GO:0003700(sequence-specific DNA binding transcription factor activity)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0006357(regulation of transcription from RNA polymerase II promoter)|GO:0006913(nucleocytoplasmic transport)|GO:0046983(protein dimerization activity)|GO:1900402(regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter)
FALSE
AAGACTCAACCTTCTGGAAAGAAAAGGGAACTTTCCACAGTGAATGTTAACGTGTGTGTG
A_42_P453685
FQ224515 Rn.8372
ENSRNOT00000014384
ens|ENSRNOT00000014384|gb|FQ224515|gb|FQ229658|tc|TC623064
chr2:159072213-159072154
rn|2q31
Rattus norvegicus TL0ACA63YI07 mRNA sequence. [FQ224515]
FALSE
TGTAGGCAGCCATGAACAATCTATTTTGAGCCACTTTAGGGAGAAAAACTTTGTATTTTT
A_42_P453737
XM_006252377 306055 Pcdh17
protocadherin 17
Rn.163289
ref|XM_006252377|ref|XM_006252378|ref|XM_006252379|ref|XM_006252381
chr15:66484938-66484997
rn|15q12
PREDICTED: Rattus norvegicus protocadherin 17 (Pcdh17), transcript variant X1, mRNA [XM_006252377]
GO:0005509(calcium ion binding)|GO:0005886(plasma membrane)|GO:0007156(homophilic cell adhesion)|GO:0016021(integral to membrane)
FALSE
AAATGGCACCGTAAAATATAGTCATGTAGTAATGAGCAGTATGCTTTATGAGAACCAGGT
A_42_P453853
NM_022277 64044 Casp8
caspase 8
Rn.54474
ENSRNOT00000016613
ref|NM_022277|ens|ENSRNOT00000016613|ref|XM_006245015|ref|XM_006245014
chr9:57437607-57437666
rn|9q31
Rattus norvegicus caspase 8 (Casp8), mRNA [NM_022277]
GO:0001525(angiogenesis)|GO:0001841(neural tube formation)|GO:0004175(endopeptidase activity)|GO:0004197(cysteine-type endopeptidase activity)|GO:0005123(death receptor binding)|GO:0005164(tumor necrosis factor receptor binding)|GO:0005515(protein binding)|GO:0005634(nucleus)|GO:0005654(nucleoplasm)|GO:0005737(cytoplasm)|GO:0005739(mitochondrion)|GO:0005815(microtubule organizing center)|GO:0005829(cytosol)|GO:0005886(plasma membrane)|GO:0006508(proteolysis)|GO:0006915(apoptotic process)|GO:0006919(activation of cysteine-type endopeptidase activity involved in apoptotic process)|GO:0007507(heart development)|GO:0008233(peptidase activity)|GO:0008625(induction of apoptosis via death domain receptors)|GO:0009409(response to cold)|GO:0030225(macrophage differentiation)|GO:0030690(Noc1p-Noc2p complex)|GO:0031264(death-inducing signaling complex)|GO:0031265(CD95 death-inducing signaling complex)|GO:0031625(ubiquitin protein ligase binding)|GO:0032025(response to cobalt ion)|GO:0032355(response to estradiol stimulus)|GO:0032403(protein complex binding)|GO:0032496(response to lipopolysaccharide)|GO:0034612(response to tumor necrosis factor)|GO:0035877(death effector domain binding)|GO:0043005(neuron projection)|GO:0043123(positive regulation of I-kappaB kinase/NF-kappaB cascade)|GO:0043124(negative regulation of I-kappaB kinase/NF-kappaB cascade)|GO:0043234(protein complex)|GO:0044297(cell body)|GO:0045121(membrane raft)|GO:0045471(response to ethanol)|GO:0045651(positive regulation of macrophage differentiation)|GO:0045862(positive regulation of proteolysis)|GO:0046677(response to antibiotic)|GO:0046982(protein heterodimerization activity)|GO:0051291(protein heterooligomerization)|GO:0051603(proteolysis involved in cellular protein catabolic process)|GO:0060546(negative regulation of necroptosis)|GO:0070243(regulation of thymocyte apoptotic process)|GO:0071260(cellular response to mechanical stimulus)|GO:0071407(cellular response to organic cyclic compound)|GO:0097110(scaffold protein binding)|GO:0097153(cysteine-type endopeptidase activity involved in apoptotic process)|GO:0097190(apoptotic signaling pathway)|GO:0097191(extrinsic apoptotic signaling pathway)|GO:0097194(execution phase of apoptosis)|GO:0097199(cysteine-type endopeptidase activity involved in apoptotic signaling pathway)|GO:0097202(activation of cysteine-type endopeptidase activity)|GO:0097284(hepatocyte apoptotic process)|GO:2001233(regulation of apoptotic signaling pathway)|GO:2001238(positive regulation of extrinsic apoptotic signaling pathway)
FALSE
TTGTGTGTCCTAACTGATGTGTGCTCTCTACAGTTCACATGGGTTATCTGTGCACTTTTG
A_42_P453894
NM_001108296 360617 Mien1
migration and invasion enhancer 1
Rn.143893
ENSRNOT00000009485
ref|NM_001108296|ens|ENSRNOT00000009485|ref|XM_006247244|gb|FQ214212
chr10:87243261-87243202
rn|10q31
Rattus norvegicus migration and invasion enhancer 1 (Mien1), mRNA [NM_001108296]
GO:0005654(nucleoplasm)|GO:0005737(cytoplasm)|GO:0005829(cytosol)|GO:0008430(selenium binding)|GO:0030335(positive regulation of cell migration)|GO:0031235(intrinsic to internal side of plasma membrane)|GO:0043066(negative regulation of apoptotic process)|GO:0045454(cell redox homeostasis)|GO:0051491(positive regulation of filopodium assembly)|GO:0070062(extracellular vesicular exosome)
FALSE
CACAAAGAGGGATTAGACATTTCTATGGTCTAAGGAAGAAAAGAGATGTTCTCCGTGGAC
A_42_P453935
NM_001198580 288770 Naca
nascent polypeptide-associated complex alpha subunit
Rn.162909
ENSRNOT00000003550
ref|NM_001198580|ref|NM_001105939|ref|NM_001198562|ens|ENSRNOT00000003550
chr7:1341431-1341490
rn|7q11
Rattus norvegicus nascent polypeptide-associated complex alpha subunit (Naca), transcript variant 3, mRNA [NM_001198580]
GO:0003231(cardiac ventricle development)|GO:0003713(transcription coactivator activity)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0010664(negative regulation of striated muscle cell apoptotic process)|GO:0017025(TBP-class protein binding)|GO:0043403(skeletal muscle tissue regeneration)|GO:0048633(positive regulation of skeletal muscle tissue growth)|GO:0048742(regulation of skeletal muscle fiber development)|GO:0051451(myoblast migration)|GO:0061384(heart trabecula morphogenesis)|GO:0070062(extracellular vesicular exosome)|GO:2000138(positive regulation of cell proliferation involved in heart morphogenesis)
FALSE
TTACAGGGGTTACGAGAGTCACTATCCGGAAATCTAAAAATATCCTCTTTGTCATCACAA
A_42_P454066
XR_357013 100912473 LOC100912473
serine/arginine-rich splicing factor 7-like
ref|XR_357013|ref|XR_349035|tc|TC630442
chr9:45563416-45563475
rn|9q22
PREDICTED: Rattus norvegicus serine/arginine-rich splicing factor 7-like (LOC100912473), transcript variant X2, misc_RNA [XR_357013]
FALSE
GACACAGAATGTCCAGAAAGAATGGACTGAAGTTCTCAAGTTCACCCTGAAAAGTCATTT
A_42_P454206
NM_001173354 315949 Armc8
armadillo repeat containing 8
Rn.8146
ENSRNOT00000019536
ref|NM_001173354|ens|ENSRNOT00000019536|ref|XM_006243622|ref|XM_006243625
chr8:104342200-104342141
rn|8q31
Rattus norvegicus armadillo repeat containing 8 (Armc8), mRNA [NM_001173354]
FALSE
AACAGAACTTGGGTTTTATGCACATGTCAGAGTGCTAATGTGAGAAAATCTGGGAATGGA
A_42_P454301
NM_001107166 304670 Tnpo2
transportin 2
Rn.8631
ENSRNOT00000005571
ref|NM_001107166|ens|ENSRNOT00000005571|gb|BI276117|tc|TC588749
chr19:24755817-24755758
rn|19q11
Rattus norvegicus transportin 2 (Tnpo2), mRNA [NM_001107166]
GO:0006886(intracellular protein transport)|GO:0008536(Ran GTPase binding)
FALSE
TTTTATTACCATTACCCCATGGGCTCCCAGGTCTATCCATCTGTTACTGTGCTGTGCTGG
A_42_P454311
NM_001037654 363062 Dixdc1
DIX domain containing 1
Rn.8331
ENSRNOT00000039045
ref|NM_001037654|ens|ENSRNOT00000039045|ref|XM_008766295|ref|XM_006243042
chr8:54018279-54018220
rn|8q23
Rattus norvegicus DIX domain containing 1 (Dixdc1), mRNA [NM_001037654]
GO:0003779(actin binding)|GO:0005737(cytoplasm)|GO:0005829(cytosol)|GO:0005925(focal adhesion)|GO:0019904(protein domain specific binding)|GO:0021695(cerebellar cortex development)|GO:0021795(cerebral cortex cell migration)|GO:0021799(cerebral cortex radially oriented cell migration)|GO:0021846(cell proliferation in forebrain)|GO:0021869(forebrain ventricular zone progenitor cell division)|GO:0030177(positive regulation of Wnt receptor signaling pathway)|GO:0031435(mitogen-activated protein kinase kinase kinase binding)|GO:0032956(regulation of actin cytoskeleton organization)|GO:0043015(gamma-tubulin binding)|GO:0043025(neuronal cell body)|GO:0043234(protein complex)|GO:0043679(axon terminus)|GO:0045665(negative regulation of neuron differentiation)|GO:0046330(positive regulation of JNK cascade)|GO:0050772(positive regulation of axonogenesis)|GO:0060070(canonical Wnt receptor signaling pathway)|GO:0070507(regulation of microtubule cytoskeleton organization)|GO:0090263(positive regulation of canonical Wnt receptor signaling pathway)
FALSE
TCAAAGTAATAACGTGTTTTAACTGCCTATATGTACCAGAGTTGTGAACAAGTCAAAACC
A_42_P454352
XR_359658 100911029 LOC100911029
nudC domain-containing protein 3-like
ref|XR_359658|tc|TC594102|tc|TC625211|tc|TC591126
unmapped
PREDICTED: Rattus norvegicus nudC domain-containing protein 3-like (LOC100911029), ncRNA [XR_359658]
FALSE
TGTCTACATGTCTGCATTACAGGGAGACTCAATCCCAACCAGCCGAGTAGATAGTTCTAT
A_42_P454378
NM_019214 29440 Slc26a4
solute carrier family 26 (anion exchanger), member 4
Rn.11792
ENSRNOT00000010350
ref|NM_019214|ens|ENSRNOT00000010350|ref|XM_008764576|ref|XM_008764577
chr6:49395832-49394773
rn|6q16
Rattus norvegicus solute carrier family 26 (anion exchanger), member 4 (Slc26a4), mRNA [NM_019214]
GO:0006821(chloride transport)|GO:0006885(regulation of pH)|GO:0008271(secondary active sulfate transmembrane transporter activity)|GO:0015108(chloride transmembrane transporter activity)|GO:0015111(iodide transmembrane transporter activity)|GO:0015698(inorganic anion transport)|GO:0015705(iodide transport)|GO:0016021(integral to membrane)|GO:0016324(apical plasma membrane)|GO:0031526(brush border membrane)|GO:0032880(regulation of protein localization)|GO:0070062(extracellular vesicular exosome)
FALSE
ACTTTGCTTTGCTTCAAGACGATGTACTAGAAAAGATGGAGCAGTGTGGGTTCTTTGATG
A_42_P455078
NM_001039020 303763 Zfp207
zinc finger protein 207
Rn.163156
ENSRNOT00000000253
ref|NM_001039020|ens|ENSRNOT00000000253|ref|XM_006247001|ref|XM_008768062
chr10:68624972-68625031
rn|10q26
Rattus norvegicus zinc finger protein 207 (Zfp207), mRNA [NM_001039020]
GO:0000070(mitotic sister chromatid segregation)|GO:0000776(kinetochore)|GO:0005634(nucleus)|GO:0005730(nucleolus)|GO:0007094(mitotic cell cycle spindle assembly checkpoint)|GO:0008017(microtubule binding)|GO:0008201(heparin binding)|GO:0008608(attachment of spindle microtubules to kinetochore)|GO:0046872(metal ion binding)|GO:0050821(protein stabilization)|GO:0051983(regulation of chromosome segregation)
FALSE
GTCGCAAGGTGGCCGTTACTGATCTTACTTCAAGTCTAATAGGTTTGGAGATTAAACCTT
A_42_P455277
XM_008767924 Rn.233003
ENSRNOT00000057058
ens|ENSRNOT00000057058|ref|XM_008767924|ref|XM_008775760|gb|AY903247
chr10:56152399-56151788
rn|10q24
PREDICTED: Rattus norvegicus chromodomain helicase DNA binding protein 3 (Chd3), transcript variant X2, mRNA [XM_008767924]
FALSE
GACTGTGCACCGCATTATTAACCATAGTATGGATAAAAAGGGGAATTACCACTATCTTGT
A_42_P455785
NM_080781 114023 Copb1
coatomer protein complex, subunit beta 1
Rn.4327
ENSRNOT00000016292
ref|NM_080781|ens|ENSRNOT00000016292|ref|XM_008759661|ref|XM_008759660
chr1:172200815-172200007
rn|1q34
Rattus norvegicus coatomer protein complex, subunit beta 1 (Copb1), mRNA [NM_080781]
GO:0005198(structural molecule activity)|GO:0005515(protein binding)|GO:0005737(cytoplasm)|GO:0005783(endoplasmic reticulum)|GO:0005793(endoplasmic reticulum-Golgi intermediate compartment)|GO:0005794(Golgi apparatus)|GO:0005798(Golgi-associated vesicle)|GO:0005886(plasma membrane)|GO:0006886(intracellular protein transport)|GO:0006890(retrograde vesicle-mediated transport, Golgi to ER)|GO:0006891(intra-Golgi vesicle-mediated transport)|GO:0016020(membrane)|GO:0030126(COPI vesicle coat)|GO:0030137(COPI-coated vesicle)|GO:0043231(intracellular membrane-bounded organelle)
FALSE
TTCGTGCAAAAAGTCAGGGAATGGCCTTGAGCCTTGGAGATAAAATCAACCTGTCTCAAA
A_42_P455802
NM_001013929 297797 Atp6v1h
ATPase, H+ transporting, lysosomal V1 subunit H
Rn.21454
ENSRNOT00000065402
ref|NM_001013929|ens|ENSRNOT00000065402|ref|XM_006237802|ref|XM_006237801
chr5:14603736-14603677
rn|5q12
Rattus norvegicus ATPase, H+ transporting, lysosomal V1 subunit H (Atp6v1h), mRNA [NM_001013929]
GO:0000221(vacuolar proton-transporting V-type ATPase, V1 domain)|GO:0005765(lysosomal membrane)|GO:0006897(endocytosis)|GO:0015991(ATP hydrolysis coupled proton transport)|GO:0046961(proton-transporting ATPase activity, rotational mechanism)|GO:0070062(extracellular vesicular exosome)
FALSE
TGATCCACAAGTTTTAGCTGTTGCTGCTCATGATGTTGGAGAATATGTCCGGCATTATCC
45738 26401 Kbytes .Supplementary data files not provided
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