NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL14613 Query DataSets for GPL14613
Status Public on Oct 07, 2011
Title [miRNA-2] Affymetrix Multispecies miRNA-2 Array
Technology type in situ oligonucleotide
Distribution commercial
Organism synthetic construct
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description #%create_date=Wed Dec 22 13:03:44 PST 2010
#%guid=04795ed5-9038-4dff-957e-da346791f552
#%chip_type=miRNA-2_0
# File order is all miRNAs that have mapping information grouped by organism, then all miRNAs without mapping information grouped by organism, then all sno/sca from UCSC and ensembl, and lastly the controls.
# miRNAs:
# An annot name generally represents one genome location," but may refer to multiple annotations because of multiple mature products delineated by ""-3p"" and ""-5p"""," or "".1"" and "".2""."
# Also, those with a '*' are minor products, and those without '*' or any other aforementioned suffix are considered the major product.
# Probeset IDs may appear more than once because the miRNA was mapped to multiple locations in the genome," and the annot names may have a ""-1"""," ""-2""", etc type of suffix.
# Probeset IDs with a letter suffix (eg, fru-miR-23a and fru-miR-23b) are related miRNAs where the sequence is highly similar.
# pre-miRNA transcript probesets are designated with the prefix ""hp_"""
# The annotations ""Human"," mouse and rat""",18-Oct-10,"Affymetrix normalization control mRNAs. 100 each for human, mouse and rat", are the verbatim probes and probeset id's as they appear on the respective 3-primeIVT mRNA expression arrays (U133, U230 and U430),,,,
# sno/sca:
# The sequences for the sno/sca and hairpin probesets are the entire sequences sent to Chip Design, not just the SIF regions.

 
Submission date Sep 23, 2011
Last update date May 02, 2017
Organization Affymetrix, Inc.
E-mail(s) [email protected], [email protected]
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (3459) GSM801091, GSM801092, GSM801093, GSM801094, GSM801095, GSM801096 
Series (187)
GSE32352 Role of microRNAs in Neural Stem Cell-supported Endothelial Morphogenesis
GSE33809 Inhibition of Jak2 in SET2 cell line with INC424 (two time points and 3 dose levels in triplicate)
GSE34413 Persistent Alterations in the imprinted miRNA and snoRNA populations in mouse models of fetal alcohol spectrum disorders (FASD)

Data table header descriptions
ID
Species Scientific Name
Annotation Date
Sequence Type
Sequence Source
Transcript ID(Array Design)
Alignments
Sequence Length
Sequence
miRNA_ID_LIST
SPOT_ID

Data table
ID Species Scientific Name Annotation Date Sequence Type Sequence Source Transcript ID(Array Design) Alignments Sequence Length Sequence miRNA_ID_LIST SPOT_ID
14q0_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14q0 chr14:101364257-101364333 (+) 77 TGGACCAATGATGAGACAGTGTTTATGAACAAAAGATCATGATTAATCCAGTTCTGCACAAAACACTGAGGTCCATT CDBox: 14q0
14qI-1_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-1 chr14:101391158-101391227 (+) 70 AAAGTGAGTGATGAATAGTTCTGTGGCATATGAATCATTAATTTTGATTAAACCCTAAACTCTGAAGTCC CDBox: 14qI-1
14qI-1_x_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-1 chr14:101391158-101391227 (+) 70 AAAGTGAGTGATGAATAGTTCTGTGGCATATGAATCATTAATTTTGATTAAACCCTAAACTCTGAAGTCC CDBox: 14qI-1
14qI-2_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-2 chr14:101393679-101393749 (+) 71 ATAGCCAATCATTAGTATTCTGAGCTGTAGGAATCAAAGATTTTGATTAGATTCTGTAACTCAGAGGTTTA CDBox: 14qI-2
14qI-3_x_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-3 chr14:101396256-101396326 (+) 71 TAGACCAATGATGAGTATTCTGGGGTGTCTGAATCAATGATTTTGATTAAACCCTGTAACTCTGAGGTCCA CDBox: 14qI-3
14qI-4_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-4 chr14:101402828-101402901 (+) 74 TGGACCAATGATGAGTACCATGGGGTATCTGAAACAGGATTTTTGATTAAACCCATATGCAATTCTGAGGTCCA CDBox: 14qI-4
14qI-4_x_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-4 chr14:101402828-101402901 (+) 74 TGGACCAATGATGAGTACCATGGGGTATCTGAAACAGGATTTTTGATTAAACCCATATGCAATTCTGAGGTCCA CDBox: 14qI-4
14qI-5_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-5 chr14:101404524-101404600 (+) 77 TGGATCAATGATGAGTATTGGTGGAGGTGTCTGAATCAACACTTTTGATTAAGCCCTCTGTGTAACTCTGAGATCTG CDBox: 14qI-5
14qI-6_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-6 chr14:101405893-101405966 (+) 74 TGGACCAGTGATGAATATCATGGGGTTTCTGAAACAACATTTTTGATTAAACCCATCTGCAACTCTGAGGTCCA CDBox: 14qI-6
14qI-6_x_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-6 chr14:101405893-101405966 (+) 74 TGGACCAGTGATGAATATCATGGGGTTTCTGAAACAACATTTTTGATTAAACCCATCTGCAACTCTGAGGTCCA CDBox: 14qI-6
14qI-7_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-7 chr14:101407463-101407538 (+) 76 TGGATCAATGATGAGTATGCGTGGGGCATCTGAATCAAATATTCTGATTATACCCTGTCTGTATCTCTGAGGTCCA CDBox: 14qI-7
14qI-8_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-8 chr14:101409788-101409860 (+) 73 TGGACCAATGATGAGATTGGAGGGTGTCTGAATCAAAAATTTTGATTAAAGCCATCTGTAACTCTGAGGTCCA CDBox: 14qI-8
14qI-8_x_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-8 chr14:101409788-101409860 (+) 73 TGGACCAATGATGAGATTGGAGGGTGTCTGAATCAAAAATTTTGATTAAAGCCATCTGTAACTCTGAGGTCCA CDBox: 14qI-8
14qI-9_x_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qI-9 chr14:101411986-101412056 (+) 71 TGGATCAATGATGAGTACCCTGGGGTGTCTGAATCTTGGATTTTGATTAAACCCTATAACTCTGAGGTCCA CDBox: 14qI-9
14qII-10_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qII-10 chr14:101433389-101433459 (+) 71 AAGATCAATGATGACTACTGTTAGTGTATGAGTTACACATGATGAATACATGTCTGAAACTCTGAGGTCCA CDBox: 14qII-10
14qII-10_x_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qII-10 chr14:101433389-101433459 (+) 71 AAGATCAATGATGACTACTGTTAGTGTATGAGTTACACATGATGAATACATGTCTGAAACTCTGAGGTCCA CDBox: 14qII-10
14qII-11_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qII-11 chr14:101434448-101434521 (+) 74 TGGACCAGTGATGGTGACTGGTGGTGTGTGAGTCATGCACAGTGAATATCATGTGTCTGGAACTCTGAGGTCCA CDBox: 14qII-11
14qII-11_x_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qII-11 chr14:101434448-101434521 (+) 74 TGGACCAGTGATGGTGACTGGTGGTGTGTGAGTCATGCACAGTGAATATCATGTGTCTGGAACTCTGAGGTCCA CDBox: 14qII-11
14qII-12_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qII-12 chr14:101435285-101435358 (+) 74 TGGACCAATGATGACAAATACCGGCGTATGAGTCTTGGATGATGAATAATACGTGTCTGGAACTCTGAGGTCCA CDBox: 14qII-12
14qII-12_x_st Homo sapiens 8-Oct-10 CDBox Affymetrix Proprietary Database 14qII-12 chr14:101435285-101435358 (+) 74 TGGACCAATGATGACAAATACCGGCGTATGAGTCTTGGATGATGAATAATACGTGTCTGGAACTCTGAGGTCCA CDBox: 14qII-12

Total number of rows: 20715

Table truncated, full table size 3542 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap