U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    nolc1 nucleolar and coiled-body phosphoprotein 1 [ Gymnodraco acuticeps ]

    Gene ID: 117542194, updated on 19-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    nolc1
    Gene description
    nucleolar and coiled-body phosphoprotein 1
    See related
    EnsemblRapid:ENSGAUG00000018950
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gymnodraco acuticeps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bathydraconidae; Gymnodraco
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See nolc1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current fGymAcu1.1 (GCF_902827175.1) Unplaced Scaffold NW_022992357.1 (1076243..1089142, complement)

    NW_022992357.1Genomic Context describing neighboring genes Neighboring gene mitochondrial calcium uniporter Neighboring gene mitochondrial calcium uptake 1 Neighboring gene mitochondrial ribosomal protein S6 Neighboring gene prosaposin Neighboring gene solute carrier family 29 member 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_022992357 Unplaced Scaffold Reference fGymAcu1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nucleolar and coiled-body phosphoprotein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gymnodraco acuticeps Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fGymAcu1.1

    Genomic

    1. NW_022992357.1 Reference fGymAcu1.1

      Range
      1076243..1089142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034209721.1 → XP_034065612.1  nucleolar and coiled-body phosphoprotein 1 isoform X2

      UniProtKB/TrEMBL
      A0A6P8UHC2
      Conserved Domains (2) summary
      PHA03247
      Location:600 → 936
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1213 → 1286
      SRP40_C; SRP40, C-terminal domain

    2. XM_034209729.1 → XP_034065620.1  nucleolar and coiled-body phosphoprotein 1 isoform X9

      UniProtKB/TrEMBL
      A0A6P8U3M6
      Conserved Domains (2) summary
      PHA03247
      Location:607 → 879
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1156 → 1229
      SRP40_C; SRP40, C-terminal domain

    3. XM_034209722.1 → XP_034065613.1  nucleolar and coiled-body phosphoprotein 1 isoform X3

      UniProtKB/TrEMBL
      A0A6P8TNF5
      Conserved Domains (2) summary
      PHA03247
      Location:576 → 908
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1185 → 1258
      SRP40_C; SRP40, C-terminal domain

    4. XM_034209732.1 → XP_034065623.1  nucleolar and coiled-body phosphoprotein 1 isoform X11

      UniProtKB/TrEMBL
      A0A6P8TNG2
      Conserved Domains (2) summary
      PHA03247
      Location:617 → 1023
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1137 → 1210
      SRP40_C; SRP40, C-terminal domain

    5. XM_034209734.1 → XP_034065625.1  nucleolar and coiled-body phosphoprotein 1 isoform X13

      UniProtKB/TrEMBL
      A0A6P8U3M9
      Conserved Domains (3) summary
      PHA03247
      Location:601 → 1008
      PHA03247; large tegument protein UL36; Provisional
      PRK07994
      Location:621 → 771
      PRK07994; DNA polymerase III subunits gamma and tau; Validated
      pfam05022
      Location:1052 → 1125
      SRP40_C; SRP40, C-terminal domain

    6. XM_034209733.1 → XP_034065624.1  nucleolar and coiled-body phosphoprotein 1 isoform X12

      UniProtKB/TrEMBL
      A0A6P8TN90
      Conserved Domains (2) summary
      PHA03247
      Location:603 → 831
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1108 → 1181
      SRP40_C; SRP40, C-terminal domain

    7. XM_034209730.1 → XP_034065621.1  nucleolar and coiled-body phosphoprotein 1 isoform X10

      UniProtKB/TrEMBL
      A0A6P8TN87
      Conserved Domains (2) summary
      PHA03247
      Location:603 → 871
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1148 → 1221
      SRP40_C; SRP40, C-terminal domain

    8. XM_034209723.1 → XP_034065614.1  nucleolar and coiled-body phosphoprotein 1 isoform X4

      UniProtKB/TrEMBL
      A0A6P8TN81
      Conserved Domains (2) summary
      PHA03247
      Location:603 → 908
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1185 → 1258
      SRP40_C; SRP40, C-terminal domain

    9. XM_034209724.1 → XP_034065615.1  nucleolar and coiled-body phosphoprotein 1 isoform X5

      UniProtKB/TrEMBL
      A0A6P8U3M1
      Conserved Domains (2) summary
      PHA03247
      Location:602 → 908
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1185 → 1258
      SRP40_C; SRP40, C-terminal domain

    10. XM_034209726.1 → XP_034065617.1  nucleolar and coiled-body phosphoprotein 1 isoform X6

      UniProtKB/TrEMBL
      A0A6P8UHC9
      Conserved Domains (2) summary
      PHA03247
      Location:602 → 900
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1177 → 1250
      SRP40_C; SRP40, C-terminal domain

    11. XM_034209728.1 → XP_034065619.1  nucleolar and coiled-body phosphoprotein 1 isoform X8

      UniProtKB/TrEMBL
      A0A6P8TN86
      Conserved Domains (2) summary
      PHA03247
      Location:601 → 1024
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1158 → 1231
      SRP40_C; SRP40, C-terminal domain

    12. XM_034209727.1 → XP_034065618.1  nucleolar and coiled-body phosphoprotein 1 isoform X7

      UniProtKB/TrEMBL
      A0A6P8TNG0
      Conserved Domains (2) summary
      PHA03247
      Location:601 → 897
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1174 → 1247
      SRP40_C; SRP40, C-terminal domain

    13. XM_034209720.1 → XP_034065611.1  nucleolar and coiled-body phosphoprotein 1 isoform X1

      UniProtKB/TrEMBL
      A0A6P8TN79
      Related
      ENSGAUP00000041577.1, ENSGAUT00000043293.1
      Conserved Domains (2) summary
      PHA03247
      Location:601 → 937
      PHA03247; large tegument protein UL36; Provisional
      pfam05022
      Location:1214 → 1287
      SRP40_C; SRP40, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.