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Conserved domains on  [gi|1839694152|ref|XP_034065619|]
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nucleolar and coiled-body phosphoprotein 1 isoform X8 [Gymnodraco acuticeps]

Protein Classification

nucleolar and coiled-body phosphoprotein 1 family protein( domain architecture ID 10523427)

nucleolar and coiled-body phosphoprotein 1 (NOLC1) family protein; similar to mammalian NOLC1 (also known as Nopp140) which may participate in the regulation of rRNA transcription by interacting with the largest subunit of RNA polymerase I, and to Saccharomyces cerevisiae suppressor protein Srp40 which is a weak suppressor of a mutant of the subunit AC40 of DNA dependent RNA polymerase I and III; may be a chaperone involved in nucleocytoplasmic transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1158-1231 2.37e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


:

Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.33  E-value: 2.37e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694152 1158 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1231
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 601-1024 1.25e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.03  E-value: 1.25e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  601 AKPAKPATPAK-----AKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSD 675
Cdd:PHA03247  2593 PQSARPRAPVDdrgdpRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  676 SSSEDEEPAKAKP-ATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKakPAT 754
Cdd:PHA03247  2673 AAQASSPPQRPRRrAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG--PAT 2750

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  755 PVAkPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA---KAKPATPVA 831
Cdd:PHA03247  2751 PGG-PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAlppAASPAGPLP 2829

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  832 KPAAAAESSSDSSSEDEEPATP---AKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAAKPA 908
Cdd:PHA03247  2830 PPTSAQPTAPPPPPGPPPPSLPlggSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPP 2909

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  909 TPASKPATPTAKAAAAESSSESSSEDEEPAKAKPAisAKAKPTTPAAKPAAAAESSSDSDSDSEDEAAKPAVKKPTPAAE 988
Cdd:PHA03247  2910 QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA--PTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSRE 2987

                          410       420       430
                   ....*....|....*....|....*....|....*.
gi 1839694152  989 APASTPKASKKKAESSSDSSDSETEAKTTPAKPPVT 1024
Cdd:PHA03247  2988 APASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1158-1231 2.37e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.33  E-value: 2.37e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694152 1158 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1231
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 PHA03247
large tegument protein UL36; Provisional
 601-1024 1.25e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.03  E-value: 1.25e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  601 AKPAKPATPAK-----AKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSD 675
Cdd:PHA03247  2593 PQSARPRAPVDdrgdpRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  676 SSSEDEEPAKAKP-ATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKakPAT 754
Cdd:PHA03247  2673 AAQASSPPQRPRRrAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG--PAT 2750

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  755 PVAkPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA---KAKPATPVA 831
Cdd:PHA03247  2751 PGG-PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAlppAASPAGPLP 2829

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  832 KPAAAAESSSDSSSEDEEPATP---AKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAAKPA 908
Cdd:PHA03247  2830 PPTSAQPTAPPPPPGPPPPSLPlggSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPP 2909

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  909 TPASKPATPTAKAAAAESSSESSSEDEEPAKAKPAisAKAKPTTPAAKPAAAAESSSDSDSDSEDEAAKPAVKKPTPAAE 988
Cdd:PHA03247  2910 QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA--PTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSRE 2987

                          410       420       430
                   ....*....|....*....|....*....|....*.
gi 1839694152  989 APASTPKASKKKAESSSDSSDSETEAKTTPAKPPVT 1024
Cdd:PHA03247  2988 APASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1158-1231 2.37e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.33  E-value: 2.37e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694152 1158 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1231
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 PHA03247
large tegument protein UL36; Provisional
 601-1024 1.25e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.03  E-value: 1.25e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  601 AKPAKPATPAK-----AKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSD 675
Cdd:PHA03247  2593 PQSARPRAPVDdrgdpRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  676 SSSEDEEPAKAKP-ATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKakPAT 754
Cdd:PHA03247  2673 AAQASSPPQRPRRrAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG--PAT 2750

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  755 PVAkPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA---KAKPATPVA 831
Cdd:PHA03247  2751 PGG-PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAlppAASPAGPLP 2829

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  832 KPAAAAESSSDSSSEDEEPATP---AKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAAKPA 908
Cdd:PHA03247  2830 PPTSAQPTAPPPPPGPPPPSLPlggSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPP 2909

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  909 TPASKPATPTAKAAAAESSSESSSEDEEPAKAKPAisAKAKPTTPAAKPAAAAESSSDSDSDSEDEAAKPAVKKPTPAAE 988
Cdd:PHA03247  2910 QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA--PTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSRE 2987

                          410       420       430
                   ....*....|....*....|....*....|....*.
gi 1839694152  989 APASTPKASKKKAESSSDSSDSETEAKTTPAKPPVT 1024
Cdd:PHA03247  2988 APASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 621-759 1.50e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 52.56  E-value: 1.50e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  621 KPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPA 700
Cdd:PRK07994   360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1839694152  701 KAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAtPVAKP 759
Cdd:PRK07994   440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKE-PVATP 497
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 601-716 1.85e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.02  E-value: 1.85e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  601 AKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSED 680
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1839694152  681 EEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPV 716
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
652-881 3.03e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.77  E-value: 3.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  652 ATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAkpATPAKAKPSTPAKakPATPVAKPAAAAESSSDSSS 731
Cdd:PRK07003   367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAA--LAPKAAAAAAATR--AEAPPAAPAPPATADRGDDA 442

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  732 EDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKakPATPVAKPAAAAESSSDSSSEDE 811
Cdd:PRK07003   443 ADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAA--APSAATPAAVPDARAPAAASRED 520

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  812 EPAKAKPATPAKAKPATPVAKPAAAAESSSDS------------SSEDEEPATPAKAKPATPAKAKPATPakaKPATPVA 879
Cdd:PRK07003   521 APAAAAPPAPEARPPTPAAAAPAARAGGAAAAldvlrnagmrvsSDRGARAAAAAKPAAAPAAAPKPAAP---RVAVQVP 597


                   ..
gi 1839694152  880 KP 881
Cdd:PRK07003   598 TP 599
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
652-872 4.73e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.03  E-value: 4.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  652 ATPAKAKpATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSS 731
Cdd:PRK12323   372 AGPATAA-AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  732 EDEEPATPAkakpatPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDE 811
Cdd:PRK12323   451 APAPAAAPA------AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAE 524

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839694152  812 EPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKA 872
Cdd:PRK12323   525 SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALA 585
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 658-796 1.21e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.48  E-value: 1.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  658 KPATPVAKPaaaAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPA 737
Cdd:PRK07994   360 HPAAPLPEP---EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839694152  738 TPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKP--ATPAKAKPATPVAKP 796
Cdd:PRK07994   437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRwkATNPVEVKKEPVATP 497
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
590-785 1.38e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.49  E-value: 1.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  590 SSDSSSEDEEPAKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAA 669
Cdd:PRK12323   380 APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPA 459

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  670 AESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAK 749
Cdd:PRK12323   460 AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFE 539

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1839694152  750 AKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA 785
Cdd:PRK12323   540 TLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 601-758 2.44e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 48.71  E-value: 2.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  601 AKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPvakpaaaaesSSDSSSED 680
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQ----------QLQRAQGA 435

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  681 EEPAKAKPATPAKAKPATPAK---AKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPAtPAKAKPATPVA 757
Cdd:PRK07994   436 TKAKKSEPAAASRARPVNSALerlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKA-LEHEKTPELAA 514


                   .
gi 1839694152  758 K 758
Cdd:PRK07994   515 K 515
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 602-719 3.01e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.17  E-value: 3.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  602 KPAKPAT-PAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSED 680
Cdd:PRK14951   365 KPAAAAEaAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1839694152  681 EEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKP 719
Cdd:PRK14951   445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 655-759 3.80e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 48.35  E-value: 3.80e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  655 AKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPvakpaaaaesssdsssede 734
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA------------------- 94

                           90       100
                   ....*....|....*....|....*
gi 1839694152  735 EPATPAKAKPATPAKAKPATPVAKP 759
Cdd:PRK12270    95 APAAPPAAAAAAAPAAAAVEDEVTP 119
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 736-875 7.02e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 47.17  E-value: 7.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  736 PATPAKAKPATPAKAKPA-TPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAkPAAAAESSSDSSSEDEEPA 814
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAaSAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS-QLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1839694152  815 KAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKP---ATPAKAKPA 875
Cdd:PRK07994   440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKepvATPKALKKA 503
PHA03247 PHA03247
large tegument protein UL36; Provisional
 646-1114 7.96e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 7.96e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  646 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA--KAKPATPAKAKPSTPAKAKPATPVAKPAAAA 723
Cdd:PHA03247  2556 PPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVddRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAA 2635

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  724 ESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESS 803
Cdd:PHA03247  2636 NEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHAL 2715

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  804 SDSSSEDEEPAKAKPATPAKakPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKPAA 883
Cdd:PHA03247  2716 VSATPLPPGPAAARQASPAL--PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSE 2793

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  884 AAESSSDSSSEDEEPAKAKPAAKPATPASKPATPTAKAAAAESSSESSSEDEEPAKAKPAISAKAKPTTPAAKPAaaaes 963
Cdd:PHA03247  2794 SRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPS----- 2868

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  964 ssdsdsdsedeaaKPAVKKPTPAAEAPASTPKASKKKAESSSDSSDSETEAKTTPAKPPVTNGKAATPKAATPKAATPKT 1043
Cdd:PHA03247  2869 -------------RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPP 2935

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839694152 1044 PAKPAESSSSDSSSEEEEEASKSAVKPATPAATPKTTPAAKAKESSSSDSSSEEdaprraatAPTTPTTNG 1114
Cdd:PHA03247  2936 PPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAP--------ASSTPPLTG 2998
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 646-719 1.19e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 1.19e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1839694152  646 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKP 719
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 813-881 1.33e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 1.33e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1839694152  813 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 881
Cdd:PRK12270    43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
683-870 2.26e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 45.61  E-value: 2.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  683 PAKAKPATPAKAKPATPAKAKPSTPAKAKPATPV-AKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAA 761
Cdd:PRK07003   360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGAsAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  762 AAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaaaaESSSDSSSEDEEPAKAKPATPA-KAKPATPVAKPAAAAESS 840
Cdd:PRK07003   440 DDAADGDAPVPAKANARASADSRCDERDAQPPADS----GSASAPASDAPPDAAFEPAPRAaAPSAATPAAVPDARAPAA 515

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1839694152  841 SDSSSEDEEPATPA-KAKPATPAKAKPATPA 870
Cdd:PRK07003   516 ASREDAPAAAAPPApEARPPTPAAAAPAARA 546
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 777-877 2.84e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.27  E-value: 2.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  777 AKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAaaaesssdsssedeePATPAKA 856
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA---------------AAAAPAA 98

                           90       100
                   ....*....|....*....|.
gi 1839694152  857 KPATPAKAKPATPAKAKPATP 877
Cdd:PRK12270    99 PPAAAAAAAPAAAAVEDEVTP 119
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
694-881 3.10e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.87  E-value: 3.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  694 AKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAkpATPAKAKPAtPVAKPAAAAESSSDSSSED 773
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA--AAPARRSPA-PEALAAARQASARGPGGAP 448

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  774 EEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAK----------PATPAKAKPATPVAKPAAAAESSSDS 843
Cdd:PRK12323   449 APAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPAdddpppweelPPEFASPAPAQPDAAPAGWVAESIPD 528

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1839694152  844 SSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 881
Cdd:PRK12323   529 PATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 683-779 3.23e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.27  E-value: 3.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  683 PAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSdsssedeePATPAKAKPATPAKAKPATPVAKPAAA 762
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA--------PPKPAAAAAAAAAPAAPPAAAAAAAPA 109

                           90
                   ....*....|....*..
gi 1839694152  763 AESSSDSSSEDEEPAKA 779
Cdd:PRK12270   110 AAAVEDEVTPLRGAAAA 126
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 684-796 3.42e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.27  E-value: 3.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  684 AKAKPATPAKAKPATPAKAKPSTPAKAKPATPvakpaaaaesssdsssedeEPATPAKAKPATPAKAKPATPVAKPaaaa 763
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAK-------------------APAAPAPAPPAAAAPAAPPKPAAAA---- 90

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1839694152  764 esssDSSSEDEEPAKAKPATPAKAKPATPVAKP 796
Cdd:PRK12270    91 ----AAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 736-850 4.78e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.32  E-value: 4.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  736 PATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK 815
Cdd:PRK14951   378 KKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP 457

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1839694152  816 AKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEP 850
Cdd:PRK14951   458 ETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
582-829 4.81e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.46  E-value: 4.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  582 PAAAAAESSSDSSSEDEEPAKPAKPATPAKAKSATPAKAK-PATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPA 660
Cdd:PRK07003   385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEaPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD 464

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  661 TPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAkakpstPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPA 740
Cdd:PRK07003   465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP------AAVPDARAPAAASREDAPAAAAPPAPEARPPTPA 538

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  741 KAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAT 820
Cdd:PRK07003   539 AAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQ 618


                   ....*....
gi 1839694152  821 PAKAKPATP 829
Cdd:PRK07003   619 AAESRGAPP 627
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 683-796 5.03e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.32  E-value: 5.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  683 PAKAKPATPAKAKPATPAKAKPSTPAkakPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAA 762
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAA---AAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1839694152  763 AESSSDSSSEDEEPAKAKPATPAKAKPATPVAKP 796
Cdd:PRK14951   450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 610-718 5.54e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.50  E-value: 5.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  610 AKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaaaaesssdsssedeePAKAKPA 689
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA----------------AAAAAPA 97

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1839694152  690 TPAKAKPATPAKAKPSTPAKAK---PATPVAK 718
Cdd:PRK12270    98 APPAAAAAAAPAAAAVEDEVTPlrgAAAAVAK 129
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 740-833 6.19e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 6.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  740 AKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaaaaesssDSSSEDEEPAKAKPA 819
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA--------AAAAAPAAPPAAAAA 105

                           90
                   ....*....|....
gi 1839694152  820 TPAKAKPATPVAKP 833
Cdd:PRK12270   106 AAPAAAAVEDEVTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 646-759 1.02e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.16  E-value: 1.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  646 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAtPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAES 725
Cdd:PRK14951   381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA-PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1839694152  726 SSDSSSEDEEPATPAKAKPATPAKAKPATPVAKP 759
Cdd:PRK14951   460 VAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 646-719 1.32e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.34  E-value: 1.32e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1839694152  646 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAkakPATPAKAKPSTPAKAKPATPVAKP 719
Cdd:PRK12270    49 AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA---PAAPPAAAAAAAPAAAAVEDEVTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 646-776 1.97e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.39  E-value: 1.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  646 PAKAKPATPAKAKpaTPVAKPAAAAESSSDSSSEDEEPAKAkpATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAES 725
Cdd:PRK14951   366 PAAAAEAAAPAEK--KTPARPEAAAPAAAPVAQAAAAPAPA--AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1839694152  726 SSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEP 776
Cdd:PRK14951   442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 686-881 2.30e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 2.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  686 AKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAK-PATPAKAKPATPVAKPAAAAE 764
Cdd:PRK07764   586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPaPGVAAPEHHPKHVAVPDASDG 665

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  765 SSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSS 844
Cdd:PRK07764   666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1839694152  845 SEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 881
Cdd:PRK07764   746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 758-881 4.90e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.24  E-value: 4.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  758 KPAAAAesSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAkakPATPAKAKPATPVAKPAAAA 837
Cdd:PRK14951   365 KPAAAA--EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPA---AAPPAPVAAPAAAAPAAAPA 439

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1839694152  838 ESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 881
Cdd:PRK14951   440 AAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 736-816 6.17e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.03  E-value: 6.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  736 PATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK 815
Cdd:PRK12270    46 AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125


                   .
gi 1839694152  816 A 816
Cdd:PRK12270   126 A 126
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 683-829 6.42e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.62  E-value: 6.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  683 PAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAA 762
Cdd:PRK07994   364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEP 443

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1839694152  763 AESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATP 829
Cdd:PRK07994   444 AAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
motB PRK12799
flagellar motor protein MotB; Reviewed
 713-832 7.06e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 40.47  E-value: 7.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694152  713 ATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK-AKPATPAKAKPAT 791
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTvALPAAEPVNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1839694152  792 PVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAK 832
Cdd:PRK12799   378 PMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSR 418
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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