NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1839694140|ref|XP_034065612|]
View 

nucleolar and coiled-body phosphoprotein 1 isoform X2 [Gymnodraco acuticeps]

Protein Classification

nucleolar and coiled-body phosphoprotein 1 family protein( domain architecture ID 10523427)

nucleolar and coiled-body phosphoprotein 1 (NOLC1) family protein; similar to mammalian NOLC1 (also known as Nopp140) which may participate in the regulation of rRNA transcription by interacting with the largest subunit of RNA polymerase I, and to Saccharomyces cerevisiae suppressor protein Srp40 which is a weak suppressor of a mutant of the subunit AC40 of DNA dependent RNA polymerase I and III; may be a chaperone involved in nucleocytoplasmic transport

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1213-1286 1.45e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


:

Pssm-ID: 461525  Cd Length: 75  Bit Score: 121.10  E-value: 1.45e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694140 1213 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1286
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 600-936 2.82e-11

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 68.81  E-value: 2.82e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  600 AKPAKPATPAK-----AKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSD 674
Cdd:PHA03247  2593 PQSARPRAPVDdrgdpRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  675 SSSEDEEPAKAKP-ATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKakPAT 753
Cdd:PHA03247  2673 AAQASSPPQRPRRrAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG--PAT 2750

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  754 PVAkPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA---KAKPATPVA 830
Cdd:PHA03247  2751 PGG-PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAlppAASPAGPLP 2829

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  831 KPAAAAESSSDSSSEDEEPATP-----------AKAKPATPAKAKPATPAK---AKPTTPAKAKPATPVAKPAAAAESSS 896
Cdd:PHA03247  2830 PPTSAQPTAPPPPPGPPPPSLPlggsvapggdvRRRPPSRSPAAKPAAPARppvRRLARPAVSRSTESFALPPDQPERPP 2909

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|
gi 1839694140  897 DSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 936
Cdd:PHA03247  2910 QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1213-1286 1.45e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 121.10  E-value: 1.45e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694140 1213 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1286
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 PHA03247
large tegument protein UL36; Provisional
 600-936 2.82e-11

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 68.81  E-value: 2.82e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  600 AKPAKPATPAK-----AKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSD 674
Cdd:PHA03247  2593 PQSARPRAPVDdrgdpRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  675 SSSEDEEPAKAKP-ATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKakPAT 753
Cdd:PHA03247  2673 AAQASSPPQRPRRrAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG--PAT 2750

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  754 PVAkPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA---KAKPATPVA 830
Cdd:PHA03247  2751 PGG-PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAlppAASPAGPLP 2829

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  831 KPAAAAESSSDSSSEDEEPATP-----------AKAKPATPAKAKPATPAK---AKPTTPAKAKPATPVAKPAAAAESSS 896
Cdd:PHA03247  2830 PPTSAQPTAPPPPPGPPPPSLPlggsvapggdvRRRPPSRSPAAKPAAPARppvRRLARPAVSRSTESFALPPDQPERPP 2909

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|
gi 1839694140  897 DSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 936
Cdd:PHA03247  2910 QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1213-1286 1.45e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 121.10  E-value: 1.45e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694140 1213 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1286
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 PHA03247
large tegument protein UL36; Provisional
 600-936 2.82e-11

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 68.81  E-value: 2.82e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  600 AKPAKPATPAK-----AKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSD 674
Cdd:PHA03247  2593 PQSARPRAPVDdrgdpRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  675 SSSEDEEPAKAKP-ATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKakPAT 753
Cdd:PHA03247  2673 AAQASSPPQRPRRrAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG--PAT 2750

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  754 PVAkPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA---KAKPATPVA 830
Cdd:PHA03247  2751 PGG-PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAlppAASPAGPLP 2829

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  831 KPAAAAESSSDSSSEDEEPATP-----------AKAKPATPAKAKPATPAK---AKPTTPAKAKPATPVAKPAAAAESSS 896
Cdd:PHA03247  2830 PPTSAQPTAPPPPPGPPPPSLPlggsvapggdvRRRPPSRSPAAKPAAPARppvRRLARPAVSRSTESFALPPDQPERPP 2909

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|
gi 1839694140  897 DSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 936
Cdd:PHA03247  2910 QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949
PHA03247 PHA03247
large tegument protein UL36; Provisional
 645-1079 1.81e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.10  E-value: 1.81e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  645 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA--KAKPATPAKAKPSTPAKAKPATPVAKPAAAA 722
Cdd:PHA03247  2556 PPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVddRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAA 2635

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  723 ESSSDSSSEDEEPATPAKAKPATP---------AKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVA 793
Cdd:PHA03247  2636 NEPDPHPPPTVPPPERPRDDPAPGrvsrprrarRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHAL 2715

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  794 KPAAAAESSSDSSSEDEEPAKAKPATPAKAK-------PATPVAKPAAAAESSSDSSSEDEEPATPAKAKP--ATPAKAK 864
Cdd:PHA03247  2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAgpatpggPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPavASLSESR 2795

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  865 PATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATP---------------AKAKPATPAKAKP 929
Cdd:PHA03247  2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPpslplggsvapggdvRRRPPSRSPAAKP 2875

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  930 ATPVAKPAAAAESSSDSSSEDEEPAKAKPAAKPATPASKPATPTAKAAAAESSSESSSEDEEPAKAKPAisAKAKPTTPA 1009
Cdd:PHA03247  2876 AAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA--PTTDPAGAG 2953

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140 1010 AKPAAAAESSSDSDSDSEDEAAKPAVKKPTPAAEAPASTPKASKKKAESSSDSSDSETEAKTTPAKPPVT 1079
Cdd:PHA03247  2954 EPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
749-936 4.29e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.50  E-value: 4.29e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  749 AKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAT---PAKAKP 825
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARgpgGAPAPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  826 ATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAT----PAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSE 901
Cdd:PRK12323   452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADddppPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1839694140  902 DEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 936
Cdd:PRK12323   532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 787-930 1.10e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 52.95  E-value: 1.10e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  787 KPATPVAKPaaaAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPA 866
Cdd:PRK07994   360 HPAAPLPEP---EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1839694140  867 TPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKP---ATPAKAKPA 930
Cdd:PRK07994   437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKepvATPKALKKA 503
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
651-916 1.16e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.93  E-value: 1.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  651 ATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAkpATPAKAKPSTPAKakPATPVAKPAAAAESSSDSSS 730
Cdd:PRK07003   367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAA--LAPKAAAAAAATR--AEAPPAAPAPPATADRGDDA 442

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  731 EDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKakPATPVAKPAAAAESSSDSSSEDE 810
Cdd:PRK07003   443 ADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAA--APSAATPAAVPDARAPAAASRED 520

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  811 EPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAK--PATPAKAKPATPAKAKPTtPAKAKPATPVAKP 888
Cdd:PRK07003   521 APAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDrgARAAAAAKPAAAPAAAPK-PAAPRVAVQVPTP 599

                          250       260
                   ....*....|....*....|....*...
gi 1839694140  889 AAAAESSSDSSSEDEEPATPAKAKPATP 916
Cdd:PRK07003   600 RARAATGDAPPNGAARAEQAAESRGAPP 627
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 620-758 1.79e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 52.18  E-value: 1.79e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  620 KPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPA 699
Cdd:PRK07994   360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1839694140  700 KAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAtPVAKP 758
Cdd:PRK07994   440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKE-PVATP 497
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 600-715 2.95e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.64  E-value: 2.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  600 AKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSED 679
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1839694140  680 EEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPV 715
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 812-888 4.71e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.43  E-value: 4.71e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1839694140  812 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKP 888
Cdd:PRK12270    43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 812-933 8.89e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.10  E-value: 8.89e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  812 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSsedeepATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAA 891
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPA------AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1839694140  892 AESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPV 933
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 775-934 9.47e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 9.47e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  775 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAK 854
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  855 AKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVA 934
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEA 520
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 735-884 9.63e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 9.63e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  735 PATPAKAKPATPAKAKPA-TPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAkPAAAAESSSDSSSEDEEPA 813
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAaSAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS-QLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839694140  814 KAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATP 884
Cdd:PRK07994   440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
PHA03247 PHA03247
large tegument protein UL36; Provisional
 687-1169 9.88e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 9.88e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  687 PATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAK--AKPATPAKAKPATPVAKPAAAAES 764
Cdd:PHA03247  2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGdpRGPAPPSPLPPDTHAPDPPPPSPS 2632

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  765 SSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKP-ATPAKAKPATPVAKPAAaaesssdss 843
Cdd:PHA03247  2633 PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRrAARPTVGSLTSLADPPP--------- 2703

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  844 sedeePATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAT 923
Cdd:PHA03247  2704 -----PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  924 PAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAAKPATPASKPATPTAKAAAAESSSESSSEDEEPAKAKPAISAKA 1003
Cdd:PHA03247  2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140 1004 KPTTPAAKPAaaaesssdsdsdsedeaaKPAVKKPTPAAEAPASTPKASKKKAESSSDSSDSETEAKTTPAKPPVTNGKA 1083
Cdd:PHA03247  2859 GGDVRRRPPS------------------RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140 1084 ATPKAATPKAATPKTPAKPAESSSSDSSSEEEEEASKSAVKPATPAATPKTTPAAKAKESSSSDSSSEEdaprraatAPT 1163
Cdd:PHA03247  2921 PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAP--------ASS 2992


                   ....*.
gi 1839694140 1164 TPTTNG 1169
Cdd:PHA03247  2993 TPPLTG 2998
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 849-936 1.03e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 50.27  E-value: 1.03e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  849 PATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAaaesssdsssedeePATPAKAKPATPAKAKPATPAKAK 928
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAA--------------PAAPPKPAAAAAAAAAPAAPPAAA 103


                   ....*...
gi 1839694140  929 PATPVAKP 936
Cdd:PRK12270   104 AAAAPAAA 111
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
651-871 1.21e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.87  E-value: 1.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  651 ATPAKAKpATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSS 730
Cdd:PRK12323   372 AGPATAA-AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  731 EDEEPATPAkakpatPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDE 810
Cdd:PRK12323   451 APAPAAAPA------AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAE 524

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839694140  811 EPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKA 871
Cdd:PRK12323   525 SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALA 585
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 849-936 1.45e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.50  E-value: 1.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  849 PATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPaaaaesssdsssedeepatPAKAKPATPAKAKPATPAKAK 928
Cdd:PRK12270    51 AAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA-------------------AAAAAPAAPPAAAAAAAPAAA 111


                   ....*...
gi 1839694140  929 PATPVAKP 936
Cdd:PRK12270   112 AVEDEVTP 119
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
690-936 1.53e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 49.46  E-value: 1.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  690 PAKAKPATPAKAKPSTPAKAKPAtPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAkPAAAAESSSDSS 769
Cdd:PRK07003   360 PAVTGGGAPGGGVPARVAGAVPA-PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA-PPAAPAPPATAD 437

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  770 SEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEP 849
Cdd:PRK07003   438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS 517

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  850 ATPAKAKPATPA-KAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPatpakaK 928
Cdd:PRK07003   518 REDAPAAAAPPApEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAP------R 591


                   ....*...
gi 1839694140  929 PATPVAKP 936
Cdd:PRK07003   592 VAVQVPTP 599
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 657-795 1.59e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.09  E-value: 1.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  657 KPATPVAKPaaaAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPA 736
Cdd:PRK07994   360 HPAAPLPEP---EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839694140  737 TPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKP--ATPAKAKPATPVAKP 795
Cdd:PRK07994   437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRwkATNPVEVKKEPVATP 497
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
589-784 2.64e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.72  E-value: 2.64e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  589 SSDSSSEDEEPAKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAA 668
Cdd:PRK12323   380 APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPA 459

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  669 AESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAK 748
Cdd:PRK12323   460 AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFE 539

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1839694140  749 AKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA 784
Cdd:PRK12323   540 TLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 600-757 3.40e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 48.32  E-value: 3.40e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  600 AKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPvakpaaaaesSSDSSSED 679
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQ----------QLQRAQGA 435

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  680 EEPAKAKPATPAKAKPATPAK---AKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPAtPAKAKPATPVA 756
Cdd:PRK07994   436 TKAKKSEPAAASRARPVNSALerlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKA-LEHEKTPELAA 514


                   .
gi 1839694140  757 K 757
Cdd:PRK07994   515 K 515
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
735-932 3.65e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.33  E-value: 3.65e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  735 PATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAtpAKAKPATPVAKPAAAAESSSDSSSEDEEPAK 814
Cdd:PRK12323   383 AQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA--PEALAAARQASARGPGGAPAPAPAPAAAPAA 460

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  815 AKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAES 894
Cdd:PRK12323   461 AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFET 540

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1839694140  895 SSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATP 932
Cdd:PRK12323   541 LAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 654-758 4.66e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.96  E-value: 4.66e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  654 AKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPvakpaaaaesssdsssede 733
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA------------------- 94

                           90       100
                   ....*....|....*....|....*
gi 1839694140  734 EPATPAKAKPATPAKAKPATPVAKP 758
Cdd:PRK12270    95 APAAPPAAAAAAAPAAAAVEDEVTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 602-718 5.15e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.40  E-value: 5.15e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  602 PAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEE 681
Cdd:PRK14951   367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1839694140  682 PAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKP 718
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 820-936 8.53e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.02  E-value: 8.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  820 PAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPA-TPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDS 898
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAaAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1839694140  899 SSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 936
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 776-887 9.63e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.81  E-value: 9.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  776 AKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaaaaesssdsssedeEPATPAKA 855
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA---------------AAAAAPAA 98

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1839694140  856 KPATPAKAKPATPAKAKPTTPAKAkPATPVAK 887
Cdd:PRK12270    99 PPAAAAAAAPAAAAVEDEVTPLRG-AAAAVAK 129
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 645-718 1.37e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 1.37e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1839694140  645 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKP 718
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 821-918 1.98e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.04  E-value: 1.98e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  821 AKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTtpAKAKPATPVAKPAAAAESSSDSSS 900
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA--AAAAAAAAPAAPPAAAAAAAPAAA 111

                           90
                   ....*....|....*...
gi 1839694140  901 EDEEPATPAKAKPATPAK 918
Cdd:PRK12270   112 AVEDEVTPLRGAAAAVAK 129
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 682-778 4.05e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.88  E-value: 4.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  682 PAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSdsssedeePATPAKAKPATPAKAKPATPVAKPAAA 761
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA--------PPKPAAAAAAAAAPAAPPAAAAAAAPA 109

                           90
                   ....*....|....*..
gi 1839694140  762 AESSSDSSSEDEEPAKA 778
Cdd:PRK12270   110 AAAVEDEVTPLRGAAAA 126
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 683-795 4.19e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.88  E-value: 4.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  683 AKAKPATPAKAKPATPAKAKPSTPAKAKPATPvakpaaaaesssdsssedeEPATPAKAKPATPAKAKPATPVAKPaaaa 762
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAK-------------------APAAPAPAPPAAAAPAAPPKPAAAA---- 90

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1839694140  763 esssDSSSEDEEPAKAKPATPAKAKPATPVAKP 795
Cdd:PRK12270    91 ----AAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 775-885 6.22e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 6.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  775 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAkakPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAK 854
Cdd:PRK14951   381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPA---AAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP 457

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1839694140  855 AKPATPAKAKPATPAKAKPTTPAKAKPATPV 885
Cdd:PRK14951   458 ETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 609-717 6.51e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 6.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  609 AKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaaaaesssdsssedeePAKAKPA 688
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA----------------AAAAAPA 97

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1839694140  689 TPAKAKPATPAKAKPSTPAKAK---PATPVAK 717
Cdd:PRK12270    98 APPAAAAAAAPAAAAVEDEVTPlrgAAAAVAK 129
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 735-849 7.07e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 7.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  735 PATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK 814
Cdd:PRK14951   378 KKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP 457

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1839694140  815 AKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEP 849
Cdd:PRK14951   458 ETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 739-832 7.20e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 7.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  739 AKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaaaaesssDSSSEDEEPAKAKPA 818
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA--------AAAAAPAAPPAAAAA 105

                           90
                   ....*....|....
gi 1839694140  819 TPAKAKPATPVAKP 832
Cdd:PRK12270   106 AAPAAAAVEDEVTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 682-795 8.17e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 8.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  682 PAKAKPATPAKAKPATPAKAKPSTPAkakPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAA 761
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAA---AAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1839694140  762 AESSSDSSSEDEEPAKAKPATPAKAKPATPVAKP 795
Cdd:PRK14951   450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
581-828 1.20e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.30  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  581 PAAAAAESSSDSSSEDEEPAKPAKPATPAKAKSATPAKAK-PATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPA 659
Cdd:PRK07003   385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEaPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD 464

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  660 TPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAkakpstPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPA 739
Cdd:PRK07003   465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP------AAVPDARAPAAASREDAPAAAAPPAPEARPPTPA 538

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  740 KAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAT 819
Cdd:PRK07003   539 AAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQ 618


                   ....*....
gi 1839694140  820 PAKAKPATP 828
Cdd:PRK07003   619 AAESRGAPP 627
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 645-758 1.54e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 1.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  645 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAtPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAES 724
Cdd:PRK14951   381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA-PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1839694140  725 SSDSSSEDEEPATPAKAKPATPAKAKPATPVAKP 758
Cdd:PRK14951   460 VAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 645-718 1.59e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.96  E-value: 1.59e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1839694140  645 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAkakPATPAKAKPSTPAKAKPATPVAKP 718
Cdd:PRK12270    49 AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA---PAAPPAAAAAAAPAAAAVEDEVTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 645-775 3.09e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.62  E-value: 3.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  645 PAKAKPATPAKAKpaTPVAKPAAAAESSSDSSSEDEEPAKAkpATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAES 724
Cdd:PRK14951   366 PAAAAEAAAPAEK--KTPARPEAAAPAAAPVAQAAAAPAPA--AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1839694140  725 SSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEP 775
Cdd:PRK14951   442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 685-885 4.15e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 4.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  685 AKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAK-PATPAKAKPATPVAKPAAAAE 763
Cdd:PRK07764   586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPaPGVAAPEHHPKHVAVPDASDG 665

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  764 SSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSS 843
Cdd:PRK07764   666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1839694140  844 SEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPV 885
Cdd:PRK07764   746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAE 787
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 624-936 5.18e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 5.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  624 PVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKP 703
Cdd:PRK07764   386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  704 STPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKA---------------------------------- 749
Cdd:PRK07764   466 PAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATlrerwpeilaavpkrsrktwaillpeatvlgvrg 545

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  750 -------------------------------------KPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPV 792
Cdd:PRK07764   546 dtlvlgfstgglarrfaspgnaevlvtalaeelggdwQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPA 625

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  793 AKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAK 872
Cdd:PRK07764   626 APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1839694140  873 PTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 936
Cdd:PRK07764   706 AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 735-815 7.48e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.64  E-value: 7.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  735 PATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK 814
Cdd:PRK12270    46 AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125


                   .
gi 1839694140  815 A 815
Cdd:PRK12270   126 A 126
motB PRK12799
flagellar motor protein MotB; Reviewed
 712-831 9.51e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 40.08  E-value: 9.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694140  712 ATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK-AKPATPAKAKPAT 790
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTvALPAAEPVNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1839694140  791 PVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAK 831
Cdd:PRK12799   378 PMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSR 418
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH