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    RSZ22a RNA recognition motif and CCHC-type zinc finger domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816995, updated on 18-Sep-2024

    Summary

    Official Symbol
    RSZ22a
    Official Full Name
    RNA recognition motif and CCHC-type zinc finger domains containing protein
    Primary source
    TAIR:AT2G24590
    Locus tag
    AT2G24590
    See related
    Araport:AT2G24590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    At-RSZ22a; F25P17.11; F25P17_11; RS-containing zinc finger protein 22a
    Summary
    Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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    Genomic context

    See RSZ22a in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (10449631..10451184)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 17 Neighboring gene FAD-dependent oxidoreductase family protein Neighboring gene ncRNA Neighboring gene Ankyrin repeat family protein

    Interactions

    General gene information

    NM_128020.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding PubMed 
    enables protein binding PubMed 
    enables zinc ion binding  

    General protein information

    Preferred Names
    RNA recognition motif and CCHC-type zinc finger domains containing protein
    NP_180035.1
    • RNA recognition motif and CCHC-type zinc finger domains containing protein; FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 11952 Blast hits to 10510 proteins in 739 species: Archae - 6; Bacteria - 805; Metazoa - 6109; Fungi - 1395; Plants - 2528; Viruses - 91; Other Eukaryotes - 1018 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10449631..10451184
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128020.4 → NP_180035.1  RNA recognition motif and CCHC-type zinc finger domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180035.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJA6
      UniProtKB/TrEMBL
      A0A178VTR9, A0A7G2EAR6
      Conserved Domains (2) summary
      pfam00098
      Location:97 → 111
      zf-CCHC; Zinc knuckle
      cd12373
      Location:3 → 71
      RRM_SRSF3_like; RNA recognition motif (RRM) found in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins
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