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Small nuclear ribonucleoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816389, updated on 18-Sep-2024

Summary

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Official Full Name
Small nuclear ribonucleoprotein family protein
Primary source
TAIR:AT2G18740
Locus tag
AT2G18740
See related
Araport:AT2G18740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MSF3.12; MSF3_12
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (8123195..8125078)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase 3 Neighboring gene ncRNA Neighboring gene Calmodulin-binding protein Neighboring gene chromatin remodeling 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis SME1 Regulates Plant Development and Response to Abiotic Stress by Determining Spliceosome Activity Specificity. Huertas R, et al. Plant Cell, 2019 Feb. PMID 30696706, Free PMC Article
  2. PORCUPINE regulates development in response to temperature through alternative splicing. Capovilla G, et al. Nat Plants, 2018 Aug. PMID 29988152
  3. Arabidopsis ACINUS is O-glycosylated and regulates transcription and alternative splicing of regulators of reproductive transitions. Bi Y, et al. Nat Commun, 2021 Feb 11. PMID 33574257, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The putative splice regulator, PORCUPINE (PCP), is temperature-specific regulator of development in Arabidopsis thaliana.
    Title: PORCUPINE regulates development in response to temperature through alternative splicing.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084445.2
NM_127430.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of RNA splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of meristem development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
colocalizes_with nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Small nuclear ribonucleoprotein family protein
NP_001077914.1
  • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G30330.1); Has 429 Blast hits to 429 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 172; Fungi - 98; Plants - 81; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
NP_179464.1
  • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G30330.1); Has 728 Blast hits to 728 proteins in 213 species: Archae - 91; Bacteria - 0; Metazoa - 243; Fungi - 159; Plants - 127; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8123195..8125078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084445.2 → NP_001077914.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077914.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EU18, A8MRL6
    Conserved Domains (1) summary
    cd01718
    Location:7 → 71
    Sm_E; Sm protein E

  2. NM_127430.3 → NP_179464.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179464.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WZ35, A0A654EU18, Q9ZV45
    Conserved Domains (1) summary
    cd01718
    Location:7 → 85
    Sm_E; Sm protein E
Nucleotide Protein
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