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RSZ21 RS-containing zinc finger protein 21 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838997, updated on 5-Jan-2025

Summary

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Official Symbol
RSZ21
Official Full Name
RS-containing zinc finger protein 21
Primary source
TAIR:AT1G23860
Locus tag
AT1G23860
See related
Araport:AT1G23860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
At-RSZ21; RS-containing zinc finger protein 21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2
Summary
Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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Genomic context

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See RSZ21 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (8427257..8429498, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene trehalose-phosphatase/synthase 9 Neighboring gene NHL domain-containing protein Neighboring gene NHL domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel family of plant splicing factors with a Zn knuckle motif: examination of RNA binding and splicing activities. Lopato S, et al. Plant Mol Biol, 1999 Mar. PMID 10350090
  2. The plant U1 small nuclear ribonucleoprotein particle 70K protein interacts with two novel serine/arginine-rich proteins. Golovkin M, et al. Plant Cell, 1998 Oct. PMID 9761791, Free PMC Article
  3. An SC35-like protein and a novel serine/arginine-rich protein interact with Arabidopsis U1-70K protein. Golovkin M, et al. J Biol Chem, 1999 Dec 17. PMID 10593939
  4. Phosphothreonine 218 is required for the function of SR45.1 in regulating flower petal development in Arabidopsis. Zhang XN, et al. Plant Signal Behav, 2014. PMID 25763493, Free PMC Article
  5. Transportin-SR is required for proper splicing of resistance genes and plant immunity. Xu S, et al. PLoS Genet, 2011 Jun. PMID 21738492, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001123870.4
NM_001198145.1
NM_202172.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA splicing, via spliceosome TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RS-containing zinc finger protein 21
NP_001117342.1
  • SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001185074.1
  • RS-containing zinc finger protein 21 (RSZP21); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2).
NP_564208.1
  • RS-containing zinc finger protein 21 (RSZP21); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 6291 Blast hits to 5531 proteins in 385 species: Archae - 0; Bacteria - 201; Metazoa - 3437; Fungi - 488; Plants - 1566; Viruses - 48; Other Eukaryotes - 551 (source: NCBI BLink).
NP_973901.1
  • SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8427257..8429498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102234.4 → NP_564208.1  RS-containing zinc finger protein 21 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564208.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H6W9, F4I7M9, O23645, O81127, Q9LRA8
    UniProtKB/TrEMBL
    A0A178WC08, A0A5S9VS92, A0A654ECJ2
    Conserved Domains (2) summary
    pfam00098
    Location:90 → 104
    zf-CCHC; Zinc knuckle
    cd12373
    Location:3 → 70
    RRM_SRSF3_like; RNA recognition motif (RRM) found in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins

  2. NM_001123870.4 → NP_001117342.1  RS-containing zinc finger protein 21 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117342.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ECJ2
    Conserved Domains (3) summary
    COG0724
    Location:2 → 59
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12373
    Location:3 → 70
    RRM_SRSF3_like; RNA recognition motif in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins
    pfam00098
    Location:90 → 104
    zf-CCHC; Zinc knuckle

  3. NM_001198145.1 → NP_001185074.1  RS-containing zinc finger protein 21 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185074.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ECJ2
    Conserved Domains (3) summary
    COG0724
    Location:2 → 59
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12373
    Location:3 → 70
    RRM_SRSF3_like; RNA recognition motif in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins
    pfam00098
    Location:90 → 104
    zf-CCHC; Zinc knuckle

  4. NM_202172.1 → NP_973901.1  RS-containing zinc finger protein 21 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973901.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H6W9, F4I7M9, O23645, O81127, Q9LRA8
    UniProtKB/TrEMBL
    A0A178WC08, A0A5S9VS92, A0A654ECJ2
    Conserved Domains (2) summary
    pfam00098
    Location:90 → 104
    zf-CCHC; Zinc knuckle
    cd12373
    Location:3 → 70
    RRM_SRSF3_like; RNA recognition motif (RRM) found in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O81127.1

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