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KNAT7 homeobox knotted-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842602, updated on 18-Sep-2024

Summary

Official Symbol
KNAT7
Official Full Name
homeobox knotted-like protein
Primary source
TAIR:AT1G62990
Locus tag
AT1G62990
See related
Araport:AT1G62990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16P17.16; F16P17_16; IRREGULAR XYLEM 11; IRX11; IXR11; KNOTTED-like homeobox of Arabidopsis thaliana 7; TRANSCRIPTION FACTOR KNAT7
Summary
Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.
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Genomic context

See KNAT7 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (23337167..23340692)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene expansin A18 Neighboring gene transmembrane protein, putative (DUF1191) Neighboring gene nucleotide-rhamnose synthase/epimerase-reductase Neighboring gene ncRNA

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

General gene information

NM_104977.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus PubMed 
located_in nucleus  

General protein information

Preferred Names
homeobox knotted-like protein
NP_564805.1
  • KNOTTED-like homeobox of Arabidopsis thaliana 7 (KNAT7); CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.1); Has 5187 Blast hits to 5186 proteins in 324 species: Archae - 0; Bacteria - 0; Metazoa - 1947; Fungi - 303; Plants - 2774; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23337167..23340692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104977.3 → NP_564805.1  homeobox knotted-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564805.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GXB5, Q8LG94, Q9FPQ8, Q9LQ05
    UniProtKB/TrEMBL
    A0A5S9WS26, A0A654EKI7
    Conserved Domains (3) summary
    pfam03790
    Location:29 → 67
    KNOX1; KNOX1 domain
    pfam03791
    Location:84 → 134
    KNOX2; KNOX2 domain
    pfam05920
    Location:234 → 273
    Homeobox_KN; Homeobox KN domain
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