GEO DataSets

(Submitter supplied) The purpose of this study was to quantify the effects of basal leaf removal applied in Sangiovese cultivar at two different phonological stages, pre-bloom and veraison, on berry composition. As very few papers were published about the regulation of gene expression induced by vineyard management techniques, we report the first global transcriptomic analysis (integrated with agronomic and biochemical data) aiming to determine the molecular mechanisms that control Sangiovese berry composition. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL13936

24 Samples

Download data: PAIR

(Submitter supplied) Global gene expression analysis of grapevine cv. Pinot Noir berries during development and ripening. Time-course comparison of samples collected at three developmental stages (stages 33, 34 and 36 according to the modified E-L system, ref: Coombe BG, Aust J Grape Wine Res 1995, 1: 104-110) during three seasons (2003, 2005 and 2006). Data for each of the three seasons were normalized independently within each season, using gcRMA. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL1320

27 Samples

Download data: CEL

(Submitter supplied) Leaf removal is a grapevine canopy management technique widely used to modify the source-sink balance and/or microclimate around berry clusters to optimize fruit composition. In general, the removal of basal leaves before flowering reduces fruit set, hence achieving looser clusters, and improves grape composition since yield is generally curtailed more than proportionally to leaf area itself. Albeit responses to this practice seem quite consistent, overall vine performance is affected by genotype, environmental conditions, and severity of treatment. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL17894

48 Samples

Download data: PAIR

(Submitter supplied) Background: The complex and dynamic changes during grape berry development have been studied in Vitis vinifera, but little is known about these processes in other Vitis species. The grape variety ‘Norton’, with a major portion of its genome derived from Vitis aestivalis, maintains high levels of malic acid and phenolic acids in the ripening berries in comparison with V. vinifera varieties such as Cabernet Sauvignon. more...

Organism:

Vitis vinifera; Vitis sp. cv. 'Norton'

Type:

Expression profiling by array

Platform:

GPL11004

18 Samples

Download data: CEL

(Submitter supplied) Background: Cluster thinning is an agronomic practice in which a proportion of berry clusters are removed from the vine to increase the source/sink ratio and improve the quality of the remaining berries. Until now no transcriptomic data have been reported describing the mechanisms that underlie the agronomic and biochemical effects of thinning. Results: We profiled the transcriptome of Vitis vinifera cv. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL13936

18 Samples

Download data: PAIR

(Submitter supplied) We report the berry pericarp transcriptomic profiles of 5 white Vitis vinifera varieties: Vermentino, Garganega, Glera, Moscato bianco and Passerina at 4 growth stages: pea-sized berries (Bbch 75) at almost 20 days after flowering, berries beginning to touch (Bbch77) just prior véraison, the softening of the berries (Bbch 85) at the end of véraison and berries ripe for harvest (Bbch 89)

Organism:

Vitis vinifera

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19359

60 Samples

Download data: TXT

(Submitter supplied) At the onset of ripening (veraison), Vitis vinifera L. cv Muscat Hamburg fruiting cuttings were exposed to four different environmental regimes in two growth chambers set up: 20/15ºC (day/night) and 30/25ºC (day/night) and with two different photosynthetic photon flux density (PPFD) conditions (200 and 400 μmol•m−2•s−1 PPFD) at grape bunch level during a 14 h photoperiod. Fruiting cuttings were selected to have similar grape bunch size avoiding changes in berry quality. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL11004

12 Samples

Download data: CEL

(Submitter supplied) To understand the fruit changes and mechanisms involved in the compatible grapevine-virus interaction, we analyzed the berry transcriptome in two stages of development (veraison and ripening) in the red wine cultivar Cabernet Sauvignon infected with Grapevine leaf-roll-associated virus-3 (GLRaV-3). Analysis of global gene expression patterns indicate incomplete berry maturation in infected berries as compared to uninfected fruit suggesting viral infection interrupts the normal berry maturation process. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL1320

14 Samples

Download data: CEL

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL22427

16 Samples

Download data: TXT

(Submitter supplied) Grapevine (Vitis vinifera L.) is a model for the investigation of physiological and biochemical changes during the formation and ripening of non-climacteric fleshy fruits. However, the order and complexity of the molecular events during fruit development remain poorly understood. To identify the key molecular events controlling berry formation and ripening, we created a highly detailed transcriptomic and metabolomic map of berry development, based on samples collected every week from fruit-set to maturity in two grapevine genotypes for three consecutive years, resulting in 219 samples. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL22427

8 Samples

Download data: TXT

(Submitter supplied) Grapevine (Vitis vinifera L.) is a model for the investigation of physiological and biochemical changes during the formation and ripening of non-climacteric fleshy fruits. However, the order and complexity of the molecular events during fruit development remain poorly understood. To identify the key molecular events controlling berry formation and ripening, we created a highly detailed transcriptomic and metabolomic map of berry development, based on samples collected every week from fruit-set to maturity in two grapevine genotypes for three consecutive years, resulting in 219 samples. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL22427

8 Samples

Download data: TXT

(Submitter supplied) Grapevine (Vitis vinifera L.) is a model for the investigation of physiological and biochemical changes during the formation and ripening of non-climacteric fleshy fruits. However, the order and complexity of the molecular events during fruit development remain poorly understood. To identify the key molecular events controlling berry formation and ripening, we created a highly detailed transcriptomic and metabolomic map of berry development, based on samples collected every week from fruit-set to maturity in two grapevine genotypes for three consecutive years, resulting in 219 samples. more...

Organism:

Vitis vinifera

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19359

219 Samples

Download data: TXT

(Submitter supplied) The experiment was aimed at describing similarities and differences between grapevine flesh and skin ripening at the transcriptome level. Transcriptional profiles throughout flesh and skin ripening were followed in three biological replicas during two consecutive growing seasons in a table grape cultivar ‘Muscat Hamburg’. Berries were weekly picked off bunches (one bunch per vine from each selected vine) from june to august. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL11004

60 Samples

Download data: CEL

(Submitter supplied) Background Grapes (Vitis vinifera L.) are economically the most important fruit crop worldwide. However, the complexity of molecular and biochemical events that lead to the onset of ripening of nonclimacteric fruits is not fully understood which is further complicated in grapes due to seasonal and cultivar specific variantion. The Portuguese wine variety Trincadeira gives rise to high quality wines but presents extremely irregular berry ripening among seasons probably due to high susceptibility to abiotic and biotic stresses. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL11004

21 Samples

Download data: CEL, TXT

(Submitter supplied) Temperature and solar radiation influence Vitis vinifera L. berry ripening. Both environmental conditions fluctuate cyclically on a daily period basis and the strength of this fluctuation affects grape ripening too. Additionally, a molecular circadian clock regulates daily cyclic expression in a large proportion of the plant transcriptome modulating multiple developmental processes in diverse plant organs and developmental phases. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL17894

54 Samples

Download data: PAIR

(Submitter supplied) Background: Grapevine berry, a nonclimacteric fruit, goes through three developmental stages, the last one called the ripening stage, when the berry changes color and dramatically increases in sugar. Flavors derived from terpenoid and fatty acid metabolism develop at the very end of this ripening stage. Whole-genome microarray analysis was used to assess the transcriptomic response of pulp and skin of Cabernet Sauvignon berries in the latter stages of ripening between 22 and 37 °Brix. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL17894

8 Samples

Download data: PAIR

(Submitter supplied) Investigation of gene expression differences between three tissues of developmentally different berry classes before, at the onset of ripening, and at maturity The berry classes analyzed in these studies were at prevéraison stage, at midvéraison and 5 week postmidvéraison.

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL13936

63 Samples

Download data: PAIR, TXT

(Submitter supplied) Light conditions significantly influence grape berry ripening and the accumulation of phenolic compounds, but the underlying molecular basis remains partially understood. Here, we applied integrated transcriptomics and pathway-level metabolomics analyses to investigate the effect of cluster bagging during various developmental stages on phenolic metabolism in Cabernet Sauvignon grapes. Bagging treatments had limited effects on berry quality attributes at harvest and did not consistently affect phenolic acid biosynthesis between seasons. more...

Organism:

Vitis vinifera

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18740

42 Samples

Download data: XLSX

(Submitter supplied) Auxin treatment of grape (Vitis vinifera L.) berries delays ripening by inducing changes in gene expression and cell wall metabolism and could combat some deleterious climate change effects. Auxins are inhibitors of grape berry ripening and their application may be useful to delay harvest to counter effects of climate change. However, little is known about how this delay occurs. The expression of 1892 genes was significantly changed compared to the control during a 48 h time-course where the auxin 1-naphthaleneacetic acid (NAA) was applied to pre-veraison grape berries. more...

Organism:

Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL17894

30 Samples

Download data: PAIR

(Submitter supplied) Red blotch disease causes major reprogramming of grape berry metabolism and development leading to the inhibition of ripening pathways and stress responses

Organism:

Vitis vinifera

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22342

52 Samples

Download data: TXT