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| Status |
Public on Jun 28, 2017 |
| Title |
Transcriptome analysis of 5 white Italian grapevine varieties during berry development |
| Organism |
Vitis vinifera |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We report the berry pericarp transcriptomic profiles of 5 white Vitis vinifera varieties: Vermentino, Garganega, Glera, Moscato bianco and Passerina at 4 growth stages: pea-sized berries (Bbch 75) at almost 20 days after flowering, berries beginning to touch (Bbch77) just prior véraison, the softening of the berries (Bbch 85) at the end of véraison and berries ripe for harvest (Bbch 89)
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| Overall design |
mRNA profiles of 5 white grapevine varieties at 4 growth stages were generated by deep sequencing, in triplicate, using Illumina Hiseq 1000.
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| Contributor(s) |
Massonnet M, Fasoli M, Tornielli GB, Altieri M, Sandri M, Zuccolotto P, Paci P, Gardiman M, Zenoni S, Pezzotti M |
| Citation(s) |
28652263 |
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| Submission date |
Oct 27, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Mélanie Massonnet |
| E-mail(s) |
[email protected]
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| Phone |
+390458027991
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| Organization name |
University of Verona
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| Department |
Biotechnology Department
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| Lab |
Pezzotti Lab
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| Street address |
Strada Le Grazie, 15
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| City |
Verona |
| State/province |
Verona |
| ZIP/Postal code |
37134 |
| Country |
Italy |
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| Platforms (1) |
| GPL19359 |
Illumina HiSeq 1000 (Vitis vinifera) |
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| Samples (60)
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| Relations |
| BioProject |
PRJNA265039 |
| SRA |
SRP049307 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE62745_FPKM_means_cuffmerge_WHITE.txt.gz |
1.9 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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