|
| Status |
Public on Aug 26, 2011 |
| Title |
Gene expression associated with compatible viral diseases in berry |
| Organism |
Vitis vinifera |
| Experiment type |
Expression profiling by array
|
| Summary |
To understand the fruit changes and mechanisms involved in the compatible grapevine-virus interaction, we analyzed the berry transcriptome in two stages of development (veraison and ripening) in the red wine cultivar Cabernet Sauvignon infected with Grapevine leaf-roll-associated virus-3 (GLRaV-3). Analysis of global gene expression patterns indicate incomplete berry maturation in infected berries as compared to uninfected fruit suggesting viral infection interrupts the normal berry maturation process.
PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Andrea Vega. The equivalent experiment is VV28 at PLEXdb.
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| |
|
| Overall design |
GLRaV-3 virus-infected, developmental stage: Veraison(3-replications);
GLRaV-3 virus-infected, developmental stage: Ripening(3-replications);
Virus-free, developmental stage: Veraison(4-replications);
Virus-free, developmental stage: Ripening(4-replications)
|
| Web link |
http://www.plexdb.org/modules/PD_browse/experiment_browser.php?experiment=VV28
|
| |
|
| Contributor(s) |
Vega A, Arce-Johnson P |
| Citation(s) |
21786204 |
| |
| Submission date |
Aug 25, 2011 |
| Last update date |
Jun 22, 2017 |
| Contact name |
PLEXdb Curator, Sudhansu Dash |
| Organization name |
Iowa State University
|
| Department |
Virtual Reality Application Center
|
| Lab |
PLEXdb
|
| Street address |
1023 Crop Genomes Informatics Lab (Iowa State University)
|
| City |
Ames |
| State/province |
IA |
| ZIP/Postal code |
50011 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL1320 |
[Vitis_Vinifera] Affymetrix Vitis vinifera (Grape) Genome Array |
|
| Samples (14)
|
| GSM786048 |
pathogen infection: GLRaV-3 virus-infected - developmental stage name: Veraison - rep1 |
| GSM786049 |
pathogen infection: GLRaV-3 virus-infected - developmental stage name: Veraison - rep2 |
| GSM786050 |
pathogen infection: GLRaV-3 virus-infected - developmental stage name: Veraison - rep3 |
| GSM786051 |
pathogen infection: GLRaV-3 virus-infected - developmental stage name: Ripening - rep1 |
| GSM786052 |
pathogen infection: GLRaV-3 virus-infected - developmental stage name: Ripening - rep2 |
| GSM786053 |
pathogen infection: GLRaV-3 virus-infected - developmental stage name: Ripening - rep3 |
| GSM786054 |
pathogen infection: Virus-free - developmental stage name: Veraison - rep1 |
| GSM786055 |
pathogen infection: Virus-free - developmental stage name: Veraison - rep2 |
| GSM786056 |
pathogen infection: Virus-free - developmental stage name: Veraison - rep3 |
| GSM786057 |
pathogen infection: Virus-free - developmental stage name: Veraison - rep4 |
| GSM786058 |
pathogen infection: Virus-free - developmental stage name: Ripening - rep1 |
| GSM786059 |
pathogen infection: Virus-free - developmental stage name: Ripening - rep2 |
| GSM786060 |
pathogen infection: Virus-free - developmental stage name: Ripening - rep3 |
| GSM786061 |
pathogen infection: Virus-free - developmental stage name: Ripening - rep4 |
|
| Relations |
| BioProject |
PRJNA145409 |
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