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    Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820780, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Leucine-rich repeat (LRR) family protein
    Primary source
    TAIR:AT3G15410
    Locus tag
    AT3G15410
    See related
    Araport:AT3G15410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    22
    Sequence:
    Chromosome: 3; NC_003074.8 (5203205..5207574)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene HrpN-interacting protein from malus protein Neighboring gene anther 20 Neighboring gene Transcription factor TFIIIC, tau55-related protein Neighboring gene Regulator of chromosome condensation (RCC1) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The leucine-rich repeat as a protein recognition motif. Kobe B, et al. Curr Opin Struct Biol, 2001 Dec. PMID 11751054
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001202972.1
    NM_112409.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat (LRR) family protein
    NP_001189901.1
    • Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT3G24240.1).
    NP_188160.2
    • Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT3G24240.1); Has 114082 Blast hits to 37818 proteins in 1375 species: Archae - 59; Bacteria - 12764; Metazoa - 51111; Fungi - 3119; Plants - 39584; Viruses - 19; Other Eukaryotes - 7426 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5203205..5207574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112409.4 → NP_188160.2  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188160.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VE02, A0A384LB20, A0A5S9XCX7, A0A654F8H5, Q8L7Z2
      Conserved Domains (3) summary
      PRK15370
      Location:14 → 115
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      PLN00113
      Location:66 → 550
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:361 → 382
      LRR_RI; leucine-rich repeat [structural motif]

    2. NM_001202972.1 → NP_001189901.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189901.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XCX7, A0A654F8H5, F4IYR7
      Conserved Domains (3) summary
      cd00116
      Location:358 → 562
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:367 → 388
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:505 → 564
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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