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    RAP2.2 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820643, updated on 18-Sep-2024

    Summary

    Official Symbol
    RAP2.2
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT3G14230
    Locus tag
    AT3G14230
    See related
    Araport:AT3G14230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    related to AP2 2
    Summary
    encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
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    Genomic context

    See RAP2.2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (4737120..4739298, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene GDSL-like lipase/acylhydrolase superfamily protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene GDSL-motif lipase 4 Neighboring gene Subtilase family protein Neighboring gene RING/U-box superfamily protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    NM_112281.2
    NM_180251.3
    NM_180252.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding PubMed 
    enables DNA binding PubMed 
    enables DNA-binding transcription factor activity PubMed 
    enables DNA-binding transcription factor activity PubMed 
    enables protein binding PubMed 
    enables transcription cis-regulatory region binding PubMed 
    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    uncharacterized protein
    NP_566482.1
    • related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6244 Blast hits to 5852 proteins in 259 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 43 (source: NCBI BLink).
    NP_850582.1
    • related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5845 proteins in 257 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 6193; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).
    NP_850583.1
    • related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5847 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4737120..4739298 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180251.3NP_850582.1  uncharacterized protein AT3G14230 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850582.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VM98, A0A5S9XC16, A0A654F726
      Conserved Domains (1) summary
      smart00380
      Location:123186
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    2. NM_180252.1NP_850583.1  uncharacterized protein AT3G14230 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850583.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VN40, A0A654F726, A0A7G2EI37
      Conserved Domains (1) summary
      smart00380
      Location:122185
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    3. NM_112281.2NP_566482.1  uncharacterized protein AT3G14230 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566482.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MRL7, O23104, Q8LE76, Q9LUM4
      UniProtKB/TrEMBL
      A0A178VM98, A0A654F726
      Conserved Domains (1) summary
      smart00380
      Location:127190
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
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